HL_5LZS_028

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5LZS|1|5|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_028 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0759

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZS|1|5|G|1627
5LZS|1|5|C|1628
5LZS|1|5|G|1629
5LZS|1|5|A|1630
5LZS|1|5|A|1631
5LZS|1|5|A|1632
5LZS|1|5|G|1633
5LZS|1|5|A|1634
5LZS|1|5|C|1635

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37