HL_5LZS_058

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

5LZS|1|5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_058 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.0951

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5LZS|1|5|U|3796
5LZS|1|5|C|3797
5LZS|1|5|U|3798
5LZS|1|5|A|3799
5LZS|1|5|A|3800
5LZS|1|5|U|3801
5LZS|1|5|U|3802
5LZS|1|5|A|3803
5LZS|1|5|G|3804

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain V

uL14