HL_5LZS_091

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

5LZS|1|9|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_091 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.1105

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5LZS|1|9|G|377
5LZS|1|9|U|378
5LZS|1|9|C|379
5LZS|1|9|G|380
5LZS|1|9|C|381
5LZS|1|9|C|382
5LZS|1|9|G|383
5LZS|1|9|U|384
5LZS|1|9|G|385
5LZS|1|9|C|386
5LZS|1|9|C|387

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain II

40S ribosomal protein S8

Chain LL

uS17