HL_5LZT_091

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

5LZT|1|9|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZT_091 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.0966

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5LZT|1|9|G|377
5LZT|1|9|U|378
5LZT|1|9|C|379
5LZT|1|9|G|380
5LZT|1|9|C|381
5LZT|1|9|C|382
5LZT|1|9|G|383
5LZT|1|9|U|384
5LZT|1|9|G|385
5LZT|1|9|C|386
5LZT|1|9|C|387

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain II

eS8

Chain LL

uS17