HL_5LZU_028

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5LZU|1|5|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_028 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0772

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZU|1|5|G|1627
5LZU|1|5|C|1628
5LZU|1|5|G|1629
5LZU|1|5|A|1630
5LZU|1|5|A|1631
5LZU|1|5|A|1632
5LZU|1|5|G|1633
5LZU|1|5|A|1634
5LZU|1|5|C|1635

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37