3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GGAUGAAC
Length
8 nucleotides
Bulged bases
5LZU|1|5|A|1891, 5LZU|1|5|A|1892
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZU_033 not in the Motif Atlas
Homologous match to HL_5TBW_026
Geometric discrepancy: 0.1809
The information below is about HL_5TBW_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_44398.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

5LZU|1|5|G|1886
5LZU|1|5|G|1887
5LZU|1|5|A|1888
5LZU|1|5|U|1889
5LZU|1|5|G|1890
5LZU|1|5|A|1891
5LZU|1|5|A|1892
5LZU|1|5|C|1893

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain F
uL30
Chain e
eL32
Chain f
eL33

Coloring options:


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