3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
UCAAACGGUAACG
Length
13 nucleotides
Bulged bases
5LZU|1|5|A|4214, 5LZU|1|5|C|4221
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZU_061 not in the Motif Atlas
Homologous match to HL_5TBW_055
Geometric discrepancy: 0.1203
The information below is about HL_5TBW_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.9
Basepair signature
cWW-tHH-cWW-tHS-F-F-tWW
Number of instances in this motif group
8

Unit IDs

5LZU|1|5|U|4210
5LZU|1|5|C|4211
5LZU|1|5|A|4212
5LZU|1|5|A|4213
5LZU|1|5|A|4214
5LZU|1|5|C|4215
5LZU|1|5|G|4216
5LZU|1|5|G|4217
5LZU|1|5|U|4218
5LZU|1|5|A|4219
5LZU|1|5|A|4220
5LZU|1|5|C|4221
5LZU|1|5|G|4222

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain I
uL16
Chain T
eL21
Chain b
eL29

Coloring options:


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