HL_5LZU_061

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

5LZU|1|5|A|4214, 5LZU|1|5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_061 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1203

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

5LZU|1|5|U|4210
5LZU|1|5|C|4211
5LZU|1|5|A|4212
5LZU|1|5|A|4213
5LZU|1|5|A|4214
5LZU|1|5|C|4215
5LZU|1|5|G|4216
5LZU|1|5|G|4217
5LZU|1|5|U|4218
5LZU|1|5|A|4219
5LZU|1|5|A|4220
5LZU|1|5|C|4221
5LZU|1|5|G|4222

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

uL16

Chain T

eL21

Chain b

eL29