HL_5LZU_067

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_067 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.117

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZU|1|5|C|4417
5LZU|1|5|G|4418
5LZU|1|5|U|4419
5LZU|1|5|U|4420
5LZU|1|5|C|4421
5LZU|1|5|A|4422
5LZU|1|5|U|4423
5LZU|1|5|A|4424
5LZU|1|5|G|4425

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

uL16

Chain ii

Eukaryotic peptide chain release factor subunit 1

Chain m

eL40