3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
AGCAGAAU
Length
8 nucleotides
Bulged bases
5LZU|1|5|G|4475
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZU_068 not in the Motif Atlas
Homologous match to HL_5TBW_062
Geometric discrepancy: 0.101
The information below is about HL_5TBW_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_79150.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
12

Unit IDs

5LZU|1|5|A|4474
5LZU|1|5|G|4475
5LZU|1|5|C|4476
5LZU|1|5|A|4477
5LZU|1|5|G|4478
5LZU|1|5|A|4479
5LZU|1|5|A|4480
5LZU|1|5|U|4481

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain H
uL6
Chain m
eL40

Coloring options:


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