HL_5LZU_073

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5LZU|1|5|G|4694, 5LZU|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_073 not in the Motif Atlas

Geometric match to HL_4WF9_062

Geometric discrepancy: 0.1385

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5LZU|1|5|C|4688
5LZU|1|5|U|4689
5LZU|1|5|G|4690
5LZU|1|5|A|4691
5LZU|1|5|A|4692
5LZU|1|5|C|4693
5LZU|1|5|G|4694
5LZU|1|5|C|4695
5LZU|1|5|C|4696
5LZU|1|5|U|4697
5LZU|1|5|C|4698
5LZU|1|5|U|4699
5LZU|1|5|A|4700
5LZU|1|5|A|4701
5LZU|1|5|G|4702

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40