Motif HL_53269.1 Version HL_53269.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-10 | 2-12 | 3-11 | 4-9 | 4-10 | 5-8 | 6-7 | 10-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8GLP_072 | 8GLP | 0.1932 | 2 | L5 | LSU rRNA | C | 4688 | PSU | 4689 | G | 4690 | A | 4691 | A | 4692 | C | 4693 | C | 4695 | C | 4696 | U | 4697 | U | 4699 | A | 4700 | A | 4701 | G | 4702 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | |
| 2 | HL_8P9A_178 | 8P9A | 0.1157 | 2 | AR | LSU rRNA | C | 3110 | U | 3111 | G | 3112 | A | 3113 | A | 3114 | C | 3115 | C | 3117 | C | 3118 | U | 3119 | U | 3121 | A | 3122 | A | 3123 | G | 3124 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | |
| 3 | HL_8OI5_063 | 8OI5 | 0.1005 | 2 | 1 | LSU rRNA | C | 3082 | U | 3083 | G | 3084 | A | 3085 | A | 3086 | C | 3087 | C | 3089 | C | 3090 | U | 3091 | U | 3093 | A | 3094 | A | 3095 | G | 3096 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | |
| 4 | HL_9DFE_064 | 9DFE | 0.1038 | 2 | 1A | LSU rRNA | C | 2745 | U | 2746 | G | 2747 | A | 2748 | A | 2749 | A | 2750 | C | 2752 | A | 2753 | U | 2754 | U | 2756 | A | 2757 | A | 2758 | G | 2759 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | |
| 5 | HL_8B0X_093 | 8B0X | 0.0000 | 2 | a | LSU rRNA | C | 2749 | U | 2750 | G | 2751 | A | 2752 | A | 2753 | A | 2754 | C | 2756 | A | 2757 | U | 2758 | U | 2760 | A | 2761 | A | 2762 | G | 2763 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | |
| 6 | HL_9E6Q_064 | 9E6Q | 0.0662 | 2 | 1 | LSU rRNA | C | 2857 | U | 2858 | G | 2859 | A | 2860 | A | 2861 | A | 2862 | C | 2864 | A | 2865 | U | 2866 | U | 2868 | A | 2869 | A | 2870 | G | 2871 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | |
| 7 | HL_4V9F_068 | 4V9F | 0.0703 | 2 | 0 | LSU rRNA | C | 2780 | U | 2781 | G | 2782 | A | 2783 | A | 2784 | C | 2785 | C | 2787 | A | 2788 | U | 2789 | U | 2791 | A | 2792 | A | 2793 | G | 2794 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | |
| 8 | HL_4WF9_062 | 4WF9 | 0.0806 | 2 | X | LSU rRNA | C | 2772 | U | 2773 | G | 2774 | A | 2775 | A | 2776 | A | 2777 | C | 2779 | A | 2780 | U | 2781 | U | 2783 | A | 2784 | A | 2785 | G | 2786 | cWW | tWH | tSH | tHW | tHW | ntSW | ncWH | ||
| 9 | HL_7A0S_065 | 7A0S | 0.2440 | 2 | X | LSU rRNA | C | 2725 | U | 2726 | G | 2727 | A | 2728 | A | 2729 | A | 2730 | C | 2732 | A | 2733 | U | 2734 | U | 2736 | A | 2737 | A | 2738 | G | 2739 | ncWW | tWH | tSH | tHW | ntHW | cWH | |||
| 10 | HL_9AXU_063 | 9AXU | 0.3181 | 2 | 2 | LSU rRNA | C | 3206 | U | 3207 | G | 3208 | A | 3209 | A | 3210 | C | 3211 | C | 3213 | C | 3214 | U | 3215 | U | 3217 | A | 3218 | A | 3219 | G | 3220 | cWW | tWH | ntSH | ntSH | ntHW | ntHW | cWH | ||
| 11 | HL_2ANN_001 | 2ANN | 0.9118 | 4 | B | RNA (25-mer) | C | 5 | G | 6 | G | 7 | A | 8 | U | 9 | C | 10 | A | 15 | C | 16 | C | 17 | C | 18 | A | 19 | A | 20 | G | 21 | cWW | tSH | tSH | ncBW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAAAGCAUCUAAG | 5 |
| CUGAACGCCUCUAAG | 3 |
| CGAACGCCUCUAAG | 1 |
| CUGAACGCAUCUAAG | 1 |
| CGGAUCAGUCACCCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAAGCAUCUAA | 5 |
| UGAACGCCUCUAA | 3 |
| (PSU)GAACGCCUCUAA | 1 |
| UGAACGCAUCUAA | 1 |
| GGAUCAGUCACCCAA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (11)
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Heat map statistics
- Min 0.06 | Avg 0.30 | Max 0.94
Coloring options: