3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GAUCAGAUACC
Length
11 nucleotides
Bulged bases
5LZU|1|9|U|1061
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZU_103 not in the Motif Atlas
Homologous match to HL_4V88_208
Geometric discrepancy: 0.1915
The information below is about HL_4V88_208
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.2
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
14

Unit IDs

5LZU|1|9|G|1054
5LZU|1|9|A|1055
5LZU|1|9|U|1056
5LZU|1|9|C|1057
5LZU|1|9|A|1058
5LZU|1|9|G|1059
5LZU|1|9|A|1060
5LZU|1|9|U|1061
5LZU|1|9|A|1062
5LZU|1|9|C|1063
5LZU|1|9|C|1064

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain 2
Transfer RNA; tRNA
Chain 3
Transfer RNA; tRNA
Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain OO
uS11
Chain aa
eS26
Chain hh
mRNA (UGA stop codon)

Coloring options:


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