3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
AUUGCAAUUAUU
Length
12 nucleotides
Bulged bases
5LZU|1|9|A|1623
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZU_114 not in the Motif Atlas
Homologous match to HL_4V88_219
Geometric discrepancy: 0.2103
The information below is about HL_4V88_219
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_03273.1
Basepair signature
cWW-F-F-tWH-F-F-F
Number of instances in this motif group
3

Unit IDs

5LZU|1|9|A|1614
5LZU|1|9|U|1615
5LZU|1|9|U|1616
5LZU|1|9|G|1617
5LZU|1|9|C|1618
5LZU|1|9|A|1619
5LZU|1|9|A|1620
5LZU|1|9|U|1621
5LZU|1|9|U|1622
5LZU|1|9|A|1623
5LZU|1|9|U|1624
5LZU|1|9|U|1625

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain PP
uS19
Chain SS
uS13
Chain TT
eS19
Chain dd
uS14

Coloring options:


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