HL_5LZU_126

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

5LZU|1|9|U|1300, 5LZU|1|9|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_126 not in the Motif Atlas

Homologous match to HL_8CRE_217

Geometric discrepancy: 0.1966

The information below is about HL_8CRE_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5LZU|1|9|A|1295
5LZU|1|9|U|1296
5LZU|1|9|U|1297
5LZU|1|9|G|1298
5LZU|1|9|A|1299
5LZU|1|9|U|1300
5LZU|1|9|A|1301
5LZU|1|9|G|1302
5LZU|1|9|C|1303
5LZU|1|9|U|1304

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain dd

uS14

Chain ff

eS31