HL_5LZV_029

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

5LZV|1|5|C|1676, 5LZV|1|5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZV_029 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3265

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5LZV|1|5|C|1675
5LZV|1|5|C|1676
5LZV|1|5|U|1677
5LZV|1|5|C|1678
5LZV|1|5|A|1679
5LZV|1|5|G|1680

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain a

uL15

Chain b

eL29

Chain o

eL42