HL_5LZV_035

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZV_035 not in the Motif Atlas

Geometric match to HL_5D8H_002

Geometric discrepancy: 0.1879

The information below is about HL_5D8H_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5LZV|1|5|U|2006
5LZV|1|5|G|2007
5LZV|1|5|U|2008
5LZV|1|5|A|2009
5LZV|1|5|A|2010
5LZV|1|5|C|2011
5LZV|1|5|A|2012
5LZV|1|5|A|2013

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain ii

eRF1(AAQ)

Chain m

eL40

Chain t

uL11