HL_5LZV_056

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AAGAAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZV_056 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1936

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5LZV|1|5|A|3723
5LZV|1|5|A|3724
5LZV|1|5|G|3725
5LZV|1|5|A|3726
5LZV|1|5|A|3727
5LZV|1|5|A|3728
5LZV|1|5|U|3729

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain i

eL36

Chain o

eL42