HL_5LZV_059

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

5LZV|1|5|A|3876, 5LZV|1|5|A|3877, 5LZV|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZV_059 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.1001

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZV|1|5|G|3873
5LZV|1|5|G|3874
5LZV|1|5|G|3875
5LZV|1|5|A|3876
5LZV|1|5|A|3877
5LZV|1|5|C|3878
5LZV|1|5|G|3879
5LZV|1|5|G|3880
5LZV|1|5|G|3881
5LZV|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain e

eL32