HL_5LZW_061

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GAGACGUUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZW_061 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3554

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5LZW|1|5|G|3944
5LZW|1|5|A|3945
5LZW|1|5|G|3946
5LZW|1|5|A|3947
5LZW|1|5|C|3948
5LZW|1|5|G|4065
5LZW|1|5|U|4066
5LZW|1|5|U|4067
5LZW|1|5|U|4068
5LZW|1|5|U|4069

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain BB

eS1

Chain i

eL36