HL_5LZX_093

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_093 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1933

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5LZX|1|9|U|416
5LZX|1|9|C|417
5LZX|1|9|A|418
5LZX|1|9|G|419
5LZX|1|9|G|420
5LZX|1|9|G|421

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain JJ

Ribosomal protein S9 (Predicted)

Chain LL

uS17

Chain WW

uS8

Chain XX

uS12