HL_5LZX_122

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

5LZX|1|5|U|2707, 5LZX|1|5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_122 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3927

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5LZX|1|5|C|2704
5LZX|1|5|G|2705
5LZX|1|5|G|2706
5LZX|1|5|U|2707
5LZX|1|5|U|2708
5LZX|1|5|C|2709
5LZX|1|5|C|2710
5LZX|1|5|G|2711
5LZX|1|5|G|2712

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain U

eL22

Chain X

uL23