HL_5LZY_001
3D structure
- PDB id
- 5LZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.99 Å
Loop
- Sequence
- CAGCUGUAG
- Length
- 9 nucleotides
- Bulged bases
- 5LZY|1|2|C|16, 5LZY|1|2|U|18, 5LZY|1|2|G|19, 5LZY|1|2|U|20
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LZY_001 not in the Motif Atlas
- Homologous match to HL_4YYE_001
- Geometric discrepancy: 0.1926
- The information below is about HL_4YYE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LZY|1|2|C|13
5LZY|1|2|A|14
5LZY|1|2|G|15
5LZY|1|2|C|16
5LZY|1|2|U|18
5LZY|1|2|G|19
5LZY|1|2|U|20
5LZY|1|2|A|21
5LZY|1|2|G|22
Current chains
- Chain 2
- tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- uL5
- Chain o
- eL42
Coloring options: