5LZY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5LZY_002 | 1/2/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_5LZY_007 | 1/5/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_5LZY_008 | 1/5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_5LZY_009 | 1/5/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_5LZY_010 | 1/5/131:137 | No text annotation | geometric HL_6DTD_001 NA | |
| HL_5LZY_011 | 1/5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_5LZY_012 | 1/5/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_5LZY_013 | 1/5/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_5LZY_014 | 1/5/289:298 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_5LZY_015 | 1/5/314:323 | Pseudoknot geometry | geometric HL_4QLM_002 HL_00911.1 | |
| HL_5LZY_016 | 1/5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_5LZY_017 | 1/5/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_5LZY_019 | 1/5/962:970 | No text annotation | ||
| HL_5LZY_020 | 1/5/1178:1183 | No text annotation | ||
| HL_5LZY_021 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_5LZY_022 | 1/5/1364:1373 | No text annotation | ||
| HL_5LZY_023 | 1/5/1389:1394 | GNRA | homologous HL_5TBW_016 NA | |
| HL_5LZY_027 | 1/5/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_5LZY_028 | 1/5/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_5LZY_029 | 1/5/1627:1635 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_5LZY_030 | 1/5/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_5LZY_032 | 1/5/1814:1824 | No text annotation | ||
| HL_5LZY_033 | 1/5/1864:1870 | GNRA | homologous HL_5TBW_025 NA | |
| HL_5LZY_034 | 1/5/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_5LZY_037 | 1/5/2087:2270 | No text annotation | ||
| HL_5LZY_038 | 1/5/2317:2322 | GNRA | homologous HL_5TBW_030 NA | |
| HL_5LZY_039 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_5LZY_040 | 1/5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_5LZY_041 | 1/5/2458:2463 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_5LZY_043 | 1/5/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_5LZY_045 | 1/5/2578:2583 | GNRA | homologous HL_5TBW_036 NA | |
| HL_5LZY_046 | 1/5/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_5LZY_047 | 1/5/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_5LZY_048 | 1/5/2705:2710 | No text annotation | geometric HL_5NFV_001 HL_69752.3 | |
| HL_5LZY_049 | 1/5/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_5LZY_050 | 1/5/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_5LZY_051 | 1/5/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_5LZY_052 | 1/5/2872:2877 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_5LZY_054 | 1/5/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_5LZY_055 | 1/5/3639:3649 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_5LZY_056 | 1/5/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_5LZY_057 | 1/5/3723:3729 | No text annotation | ||
| HL_5LZY_058 | 1/5/3757:3767 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_5LZY_059 | 1/5/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_5LZY_060 | 1/5/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_5LZY_061 | 1/5/4193:4201 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_5LZY_062 | 1/5/4210:4222 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_5LZY_063 | 1/5/4250:4258 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_5LZY_064 | 1/5/4270:4277 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_5LZY_065 | 1/5/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_5LZY_066 | 1/5/4321:4326 | GNRA | homologous HL_5TBW_059 NA | |
| HL_5LZY_067 | 1/5/4352:4362 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_5LZY_068 | 1/5/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_5LZY_069 | 1/5/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_5LZY_070 | 1/5/4497:4503 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_5LZY_071 | 1/5/4540:4545 | GNRA | homologous HL_8C3A_065 NA | |
| HL_5LZY_072 | 1/5/4603:4608 | GNRA | homologous HL_5TBW_065 NA | |
| HL_5LZY_073 | 1/5/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_5LZY_074 | 1/5/4688:4702 | No text annotation | geometric HL_4WF9_062 HL_53269.1 | |
| HL_5LZY_076 | 1/5/4906:4915 | No text annotation | geometric HL_5NFV_001 HL_69752.3 | |
| HL_5LZY_077 | 1/5/4975:4983 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_5LZY_078 | 1/5/5021:5028 | Mini UNCG | homologous HL_8C3A_072 NA | |
| HL_5LZY_125 | 1/7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_5LZY_079 | 1/7/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_5LZY_080 | 1/7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_5LZY_081 | 1/8/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_5LZY_083 | 1/8/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_5LZY_084 | 1/8/121:129 | No text annotation | ||
| HL_5LZY_085 | 1/9/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_5LZY_087 | 1/9/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_5LZY_089 | 1/9/288:295 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_5LZY_091 | 1/9/377:387 | No text annotation | ||
| HL_5LZY_092 | 1/9/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_5LZY_093 | 1/9/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_5LZY_095 | 1/9/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_5LZY_097 | 1/9/569:581 | No text annotation | homologous HL_4V88_199 NA | |
| HL_5LZY_098 | 1/9/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_5LZY_099 | 1/9/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_5LZY_102 | 1/9/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_5LZY_103 | 1/9/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_5LZY_104 | 1/9/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_5LZY_106 | 1/9/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_5LZY_107 | 1/9/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_5LZY_108 | 1/9/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_5LZY_110 | 1/9/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_5LZY_111 | 1/9/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_5LZY_113 | 1/9/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_5LZY_114 | 1/9/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_5LZY_115 | 1/9/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_5LZY_116 | 1/9/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_5LZY_118 | 1/9/1847:1852 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5LZY_001 | No text annotation | ||
| HL_5LZY_003 | T-loop with 2 stacked bulged bases | ||
| HL_5LZY_004 | No text annotation | ||
| HL_5LZY_005 | tRNA anticodon loop | ||
| HL_5LZY_006 | T-loop with 2 stacked bulged bases | ||
| HL_5LZY_018 | No text annotation | ||
| HL_5LZY_119 | No text annotation | ||
| HL_5LZY_120 | No text annotation | ||
| HL_5LZY_024 | No text annotation | ||
| HL_5LZY_121 | No text annotation | ||
| HL_5LZY_025 | No text annotation | ||
| HL_5LZY_026 | No text annotation | ||
| HL_5LZY_031 | GNRA | ||
| HL_5LZY_035 | No text annotation | ||
| HL_5LZY_036 | GNRA wlth tandem sheared | ||
| HL_5LZY_042 | No text annotation | ||
| HL_5LZY_044 | GNRA | ||
| HL_5LZY_053 | No text annotation | ||
| HL_5LZY_127 | No text annotation | ||
| HL_5LZY_122 | No text annotation | ||
| HL_5LZY_128 | No text annotation | ||
| HL_5LZY_123 | No text annotation | ||
| HL_5LZY_124 | No text annotation | ||
| HL_5LZY_075 | No text annotation | ||
| HL_5LZY_082 | No text annotation | ||
| HL_5LZY_086 | No text annotation | ||
| HL_5LZY_088 | GNRA | ||
| HL_5LZY_090 | No text annotation | ||
| HL_5LZY_094 | UNCG | ||
| HL_5LZY_096 | GNRA | ||
| HL_5LZY_100 | No text annotation | ||
| HL_5LZY_101 | Pseudoknot geometry | ||
| HL_5LZY_105 | No text annotation | ||
| HL_5LZY_126 | No text annotation | ||
| HL_5LZY_109 | No text annotation | ||
| HL_5LZY_129 | GNRA wlth extra near cWW | ||
| HL_5LZY_112 | No text annotation | ||
| HL_5LZY_117 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5LZY_001 | 1/5/6:7, 1/8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_5LZY_002 | 1/5/12:14, 1/8/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_5LZY_003 | 1/5/16:18, 1/8/139:141 | Isolated non-canonical cWW pair | geometric IL_5C5W_002 NA | |
| IL_5LZY_004 | 1/5/26:27, 1/5/55:57 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_5LZY_005 | 1/5/30:37, 1/5/44:52 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_5LZY_006 | 1/5/81:88, 1/5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_5LZY_007 | 1/5/118:121, 1/5/152:153 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_5LZY_263 | 1/5/118:122, 1/5/147:153 | No text annotation | ||
| IL_5LZY_008 | 1/5/121:122, 1/5/147:152 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_5LZY_009 | 1/5/125:126, 1/5/142:144 | Single bulged C | geometric IL_1S03_006 IL_05642.1 | |
| IL_5LZY_010 | 1/5/168:173, 1/5/263:267 | No text annotation | ||
| IL_5LZY_013 | 1/5/195:196, 1/5/244:246 | No text annotation | ||
| IL_5LZY_014 | 1/5/199:201, 1/5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_5LZY_015 | 1/5/339:342, 1/8/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 NA | |
| IL_5LZY_016 | 1/5/348:350, 1/8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_5LZY_017 | 1/5/387:390, 1/5/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_5LZY_018 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_5LZY_019 | 1/5/443:446, 1/5/1300:1304 | No text annotation | geometric IL_6AZ4_001 NA | |
| IL_5LZY_020 | 1/5/448:450, 1/5/1297:1298 | No text annotation | ||
| IL_5LZY_022 | 1/5/462:464, 1/5/691:693 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_01003.1 | |
| IL_5LZY_023 | 1/5/466:472, 1/5/682:689 | No text annotation | ||
| IL_5LZY_024 | 1/5/480:482, 1/5/672:674 | Decoding loop related | geometric IL_2O3X_003 IL_61702.1 | |
| IL_5LZY_265 | 1/5/480:485, 1/5/671:674 | No text annotation | ||
| IL_5LZY_026 | 1/5/487:488, 1/5/665:669 | Multiple bulged bases | geometric IL_1R3E_001 IL_44609.1 | |
| IL_5LZY_027 | 1/5/491:493, 1/5/661:662 | Single bulged U | geometric IL_4WF9_030 IL_97561.1 | |
| IL_5LZY_029 | 1/5/508:510, 1/5/649:650 | Single bulged A | geometric IL_6WPI_001 IL_14190.1 | |
| IL_5LZY_031 | 1/5/709:710, 1/5/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
| IL_5LZY_032 | 1/5/723:724, 1/5/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_5LZY_033 | 1/5/727:731, 1/5/938:939 | No text annotation | ||
| IL_5LZY_034 | 1/5/732:735, 1/5/928:937 | No text annotation | ||
| IL_5LZY_035 | 1/5/737:739, 1/5/923:926 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_5LZY_036 | 1/5/745:753, 1/5/910:919 | No text annotation | ||
| IL_5LZY_037 | 1/5/980:982, 1/5/1273:1275 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_5LZY_040 | 1/5/1082:1084, 1/5/1213:1217 | Isolated cWS basepair | geometric IL_4TS2_003 NA | |
| IL_5LZY_041 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_5LZY_045 | 1/5/1357:1360, 1/5/1379:1382 | No text annotation | ||
| IL_5LZY_268 | 1/5/1357:1361, 1/5/1376:1382 | No text annotation | ||
| IL_5LZY_046 | 1/5/1360:1361, 1/5/1376:1379 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.1 | |
| IL_5LZY_047 | 1/5/1425:1429, 1/5/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_5LZY_048 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared | geometric IL_4KZD_002 IL_58355.1 | |
| IL_5LZY_049 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_5LZY_051 | 1/5/1520:1522, 1/5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_5TBW_027 NA | |
| IL_5LZY_052 | 1/5/1522:1526, 1/5/1648:1655 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_5LZY_053 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_28408.1 | |
| IL_5LZY_054 | 1/5/1551:1555, 1/5/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_5LZY_055 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_5LZY_056 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_5LZY_057 | 1/5/1624:1626, 1/5/1636:1640 | Multiple bulged bases | homologous IL_5TBW_033 NA | |
| IL_5LZY_058 | 1/5/1671:1673, 1/5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_5LZY_059 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation | ||
| IL_5LZY_060 | 1/5/1694:1721, 1/5/1841:1842 | No text annotation | ||
| IL_5LZY_061 | 1/5/1723:1725, 1/5/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_5LZY_062 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_5LZY_063 | 1/5/1737:1738, 1/5/1790:1792 | Minor groove platform | homologous IL_5TBW_039 NA | |
| IL_5LZY_064 | 1/5/1739:1744, 1/5/1786:1789 | C-loop | homologous IL_5TBW_040 NA | |
| IL_5LZY_065 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_5LZY_066 | 1/5/1749:1751, 1/5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_5TBW_042 NA | |
| IL_5LZY_069 | 1/5/1858:1860, 1/5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_5LZY_070 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_5LZY_071 | 1/5/1911:1918, 1/5/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_5LZY_072 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation | ||
| IL_5LZY_073 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation | ||
| IL_5LZY_074 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_5LZY_075 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_5LZY_076 | 1/5/1946:1948, 1/5/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_5LZY_079 | 1/5/2083:2085, 1/5/2272:2273 | Single bulged U | geometric IL_5TBW_032 NA | |
| IL_5LZY_080 | 1/5/2290:2292, 1/5/2342:2345 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_5LZY_081 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_5LZY_082 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_5LZY_083 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_5LZY_084 | 1/5/2358:2364, 1/5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_5LZY_085 | 1/5/2415:2419, 1/5/2427:2429 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
| IL_5LZY_086 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_5LZY_088 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_42997.4 | |
| IL_5LZY_089 | 1/5/2549:2550, 1/5/2768:2770 | Single bulged U | geometric IL_2R8S_004 IL_97561.1 | |
| IL_5LZY_090 | 1/5/2589:2593, 1/5/2752:2756 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_5LZY_091 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_5LZY_092 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_5LZY_093 | 1/5/2646:2648, 1/5/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_5LZY_094 | 1/5/2651:2653, 1/5/2681:2682 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_5LZY_095 | 1/5/2656:2662, 1/5/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_5LZY_096 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation | ||
| IL_5LZY_097 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_5LZY_098 | 1/5/2844:2846, 1/5/3842:3844 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_5LZY_099 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW | homologous IL_5TBW_076 NA | |
| IL_5LZY_270 | 1/5/2847:2855, 1/5/3837:3841 | No text annotation | homologous IL_8P9A_305 IL_80252.1 | |
| IL_5LZY_100 | 1/5/2850:2855, 1/5/3837:3840 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_5LZY_101 | 1/5/2867:2872, 1/5/2877:2883 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_5LZY_102 | 1/5/2889:2891, 1/5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_5LZY_103 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_5LZY_104 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_5LZY_105 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_5LZY_106 | 1/5/3700:3703, 1/5/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_5LZY_107 | 1/5/3704:3705, 1/5/3745:3748 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_5LZY_108 | 1/5/3708:3710, 1/5/3741:3742 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_5LZY_271 | 1/5/3710:3713, 1/5/3740:3741 | Minor groove platform | geometric IL_7A0S_028 IL_34520.1 | |
| IL_5LZY_110 | 1/5/3715:3721, 1/5/3732:3738 | No text annotation | homologous IL_5TBW_088 NA | |
| IL_5LZY_111 | 1/5/3722:3723, 1/5/3729:3731 | Single stack bend | geometric IL_4V83_236 IL_15011.1 | |
| IL_5LZY_112 | 1/5/3780:3781, 1/5/3811:3814 | Bulged stacked bases | geometric IL_4V9F_070 IL_24886.1 | |
| IL_5LZY_113 | 1/5/3781:3792, 1/5/3808:3811 | No text annotation | homologous IL_5TBW_090 NA | |
| IL_5LZY_114 | 1/5/3895:3898, 1/5/4563:4565 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_5LZY_115 | 1/5/3900:3902, 1/5/4558:4561 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_5LZY_116 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_5LZY_117 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_5LZY_118 | 1/5/3927:3929, 1/5/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_5LZY_119 | 1/5/4082:4088, 1/5/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_5LZY_121 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_5LZY_122 | 1/5/4243:4245, 1/5/4263:4267 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_5LZY_123 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_5LZY_124 | 1/5/4295:4298, 1/5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_5LZY_125 | 1/5/4347:4350, 1/5/4364:4365 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_5LZY_126 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_5LZY_127 | 1/5/4401:4403, 1/5/4440:4442 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_5LZY_128 | 1/5/4403:4405, 1/5/4439:4440 | Major groove platform | homologous IL_5TBW_104 NA | |
| IL_5LZY_129 | 1/5/4405:4407, 1/5/4435:4439 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_5LZY_130 | 1/5/4412:4416, 1/5/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_5LZY_131 | 1/5/4453:4454, 1/5/4526:4528 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_5LZY_132 | 1/5/4456:4458, 1/5/4520:4524 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_5LZY_133 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases | homologous IL_5TBW_109 NA | |
| IL_5LZY_134 | 1/5/4466:4470, 1/5/4485:4491 | No text annotation | ||
| IL_5LZY_135 | 1/5/4495:4497, 1/5/4503:4505 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_5LZY_136 | 1/5/4537:4538, 1/5/4547:4549 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_5LZY_137 | 1/5/4580:4582, 1/5/4721:4723 | Isolated cWH basepair | geometric IL_4E5C_001 NA | |
| IL_5LZY_138 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_5LZY_139 | 1/5/4590:4592, 1/5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_5LZY_140 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_5LZY_141 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | ||
| IL_5LZY_142 | 1/5/4632:4637, 1/5/4662:4666 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_5LZY_143 | 1/5/4638:4640, 1/5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.1 | |
| IL_5LZY_144 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_5LZY_145 | 1/5/4681:4685, 1/5/4705:4709 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_5LZY_147 | 1/5/4756:4766, 1/5/4868:4877 | No text annotation | homologous IL_8P9A_352 IL_28855.1 | |
| IL_5LZY_150 | 1/5/4890:4896, 1/5/4924:4929 | No text annotation | ||
| IL_5LZY_152 | 1/5/4966:4968, 1/5/5065:5066 | Single stack bend | geometric IL_4LFB_041 IL_15011.1 | |
| IL_5LZY_153 | 1/5/4972:4975, 1/5/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_5LZY_154 | 1/5/4992:4994, 1/5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_01003.1 | |
| IL_5LZY_155 | 1/5/4996:4997, 1/5/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.1 | |
| IL_5LZY_156 | 1/5/5000:5002, 1/5/5045:5050 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_5LZY_157 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation | ||
| IL_5LZY_158 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged C | geometric IL_1S03_006 IL_05642.1 | |
| IL_5LZY_159 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_5LZY_160 | 1/7/15:16, 1/7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_5LZY_161 | 1/7/21:27, 1/7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_5LZY_162 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_5LZY_163 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_5LZY_164 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_5LZY_165 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | geometric IL_5TBW_034 NA | |
| IL_5LZY_166 | 1/7/82:85, 1/7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_5LZY_167 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_5LZY_168 | 1/9/23:25, 1/9/649:651 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
| IL_5LZY_169 | 1/9/34:36, 1/9/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_5LZY_170 | 1/9/37:40, 1/9/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.1 | |
| IL_5LZY_171 | 1/9/41:47, 1/9/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_5LZY_173 | 1/9/57:62, 1/9/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_5LZY_174 | 1/9/63:68, 1/9/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_5LZY_175 | 1/9/108:110, 1/9/351:353 | Isolated non-canonical cWW pair | geometric IL_4TS2_004 IL_71625.1 | |
| IL_5LZY_176 | 1/9/110:112, 1/9/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.1 | |
| IL_5LZY_177 | 1/9/112:115, 1/9/348:349 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_5LZY_178 | 1/9/116:121, 1/9/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_5LZY_180 | 1/9/145:151, 1/9/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_5LZY_183 | 1/9/216:219, 1/9/302:309 | No text annotation | ||
| IL_5LZY_187 | 1/9/359:364, 1/9/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_5LZY_188 | 1/9/366:371, 1/9/393:394 | No text annotation | geometric IL_5Y58_001 IL_45649.1 | |
| IL_5LZY_189 | 1/9/411:413, 1/9/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_5LZY_190 | 1/9/437:439, 1/9/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_5LZY_191 | 1/9/459:461, 1/9/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_5LZY_192 | 1/9/487:489, 1/9/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_5LZY_283 | 1/9/491:495, 1/9/508:509 | C-loop | homologous IL_8P9A_397 IL_26900.1 | |
| IL_5LZY_284 | 1/9/495:496, 1/9/506:508 | Single bulged G | homologous IL_8P9A_398 IL_28408.1 | |
| IL_5LZY_194 | 1/9/529:530, 1/9/554:556 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_5LZY_196 | 1/9/563:565, 1/9/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_5LZY_197 | 1/9/566:569, 1/9/581:584 | tSH-tHW | geometric IL_5UNE_005 NA | |
| IL_5LZY_198 | 1/9/599:606, 1/9/636:637 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_5LZY_199 | 1/9/606:608, 1/9/635:636 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_5LZY_200 | 1/9/611:617, 1/9/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_5LZY_201 | 1/9/663:665, 1/9/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_5LZY_202 | 1/9/665:671, 1/9/1161:1162 | No text annotation | geometric IL_4LFB_022 IL_20847.1 | |
| IL_5LZY_203 | 1/9/673:675, 1/9/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_5LZY_204 | 1/9/676:680, 1/9/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_5LZY_208 | 1/9/802:803, 1/9/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_5LZY_209 | 1/9/805:807, 1/9/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_5LZY_210 | 1/9/807:815, 1/9/849:856 | No text annotation | geometric IL_4V88_425 NA | |
| IL_5LZY_211 | 1/9/874:876, 1/9/910:912 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 NA | |
| IL_5LZY_213 | 1/9/922:923, 1/9/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_5LZY_214 | 1/9/925:927, 1/9/1014:1017 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10892.1 | |
| IL_5LZY_215 | 1/9/928:931, 1/9/1010:1013 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_5LZY_216 | 1/9/931:935, 1/9/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_5LZY_217 | 1/9/942:945, 1/9/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_5LZY_278 | 1/9/942:947, 1/9/979:984 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_5LZY_218 | 1/9/952:956, 1/9/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_5LZY_219 | 1/9/1042:1047, 1/9/1071:1073 | Other IL | homologous IL_4V88_435 NA | |
| IL_5LZY_220 | 1/9/1047:1051, 1/9/1067:1071 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_5LZY_221 | 1/9/1091:1093, 1/9/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_5LZY_222 | 1/9/1098:1101, 1/9/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_5LZY_223 | 1/9/1101:1103, 1/9/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_01003.1 | |
| IL_5LZY_224 | 1/9/1108:1110, 1/9/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_5LZY_225 | 1/9/1168:1175, 1/9/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_5LZY_226 | 1/9/1203:1204, 1/9/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_5LZY_227 | 1/9/1206:1208, 1/9/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_5LZY_228 | 1/9/1214:1217, 1/9/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_5LZY_229 | 1/9/1230:1232, 1/9/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_5LZY_230 | 1/9/1235:1236, 1/9/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_5LZY_231 | 1/9/1270:1272, 1/9/1510:1512 | Isolated non-canonical cWW pair | geometric IL_6IA2_001 NA | |
| IL_5LZY_232 | 1/9/1281:1287, 1/9/1314:1316 | No text annotation | ||
| IL_5LZY_279 | 1/9/1281:1290, 1/9/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_5LZY_235 | 1/9/1325:1327, 1/9/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_5LZY_236 | 1/9/1329:1333, 1/9/1498:1500 | Isolated cWS basepair | homologous IL_4V88_450 NA | |
| IL_5LZY_280 | 1/9/1329:1335, 1/9/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_5LZY_237 | 1/9/1333:1335, 1/9/1492:1498 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_5LZY_238 | 1/9/1337:1338, 1/9/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_5LZY_239 | 1/9/1347:1349, 1/9/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_5LZY_240 | 1/9/1363:1365, 1/9/1374:1375 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_5LZY_241 | 1/9/1395:1399, 1/9/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_15225.1 | |
| IL_5LZY_242 | 1/9/1400:1401, 1/9/1444:1446 | Single stack bend | geometric IL_4LFB_041 IL_15011.1 | |
| IL_5LZY_243 | 1/9/1401:1405, 1/9/1441:1444 | No text annotation | ||
| IL_5LZY_245 | 1/9/1537:1539, 1/9/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4P3T_001 NA | |
| IL_5LZY_281 | 1/9/1541:1550, 1/9/1582:1592 | No text annotation | ||
| IL_5LZY_246 | 1/9/1550:1558, 1/9/1577:1582 | 180 degree turn | geometric IL_5J7L_055 NA | |
| IL_5LZY_247 | 1/9/1560:1562, 1/9/1573:1575 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_5LZY_248 | 1/9/1604:1610, 1/9/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_5LZY_249 | 1/9/1700:1702, 1/9/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
| IL_5LZY_250 | 1/9/1702:1705, 1/9/1829:1833 | No text annotation | homologous IL_4V88_464 NA | |
| IL_5LZY_251 | 1/9/1706:1708, 1/9/1826:1828 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.1 | |
| IL_5LZY_252 | 1/9/1708:1711, 1/9/1822:1826 | Tandem non-canonical cWW pairs | geometric IL_1JID_002 IL_15225.1 | |
| IL_5LZY_253 | 1/9/1714:1716, 1/9/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_5LZY_254 | 1/9/1717:1720, 1/9/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_5LZY_255 | 1/9/1720:1722, 1/9/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_5LZY_256 | 1/9/1729:1731, 1/9/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_5LZY_257 | 1/9/1733:1736, 1/9/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_5LZY_258 | 1/9/1739:1741, 1/9/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.1 | |
| IL_5LZY_259 | 1/9/1742:1746, 1/9/1788:1792 | Triple sheared | homologous IL_4V88_474 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5LZY_262 | No text annotation | ||
| IL_5LZY_011 | Single stack bend | ||
| IL_5LZY_012 | No text annotation | ||
| IL_5LZY_021 | Single bulged C | ||
| IL_5LZY_264 | No text annotation | ||
| IL_5LZY_025 | Multiple bulged bases | ||
| IL_5LZY_028 | No text annotation | ||
| IL_5LZY_030 | No text annotation | ||
| IL_5LZY_038 | Isolated non-canonical cWW contact | ||
| IL_5LZY_266 | No text annotation | ||
| IL_5LZY_039 | No text annotation | ||
| IL_5LZY_042 | Single stack bend | ||
| IL_5LZY_267 | No text annotation | ||
| IL_5LZY_043 | No text annotation | ||
| IL_5LZY_044 | Isolated cWH basepair | ||
| IL_5LZY_050 | Single stack bend | ||
| IL_5LZY_067 | Major groove platform with extra pair | ||
| IL_5LZY_269 | No text annotation | ||
| IL_5LZY_068 | No text annotation | ||
| IL_5LZY_077 | Kink-turn | ||
| IL_5LZY_078 | Major groove platform with extra cWW | ||
| IL_5LZY_087 | Not an internal loop | ||
| IL_5LZY_109 | No text annotation | ||
| IL_5LZY_120 | No text annotation | ||
| IL_5LZY_146 | No text annotation | ||
| IL_5LZY_272 | No text annotation | ||
| IL_5LZY_148 | No text annotation | ||
| IL_5LZY_149 | Tandem non-canonical cWW pairs | ||
| IL_5LZY_151 | No text annotation | ||
| IL_5LZY_282 | No text annotation | ||
| IL_5LZY_273 | No text annotation | ||
| IL_5LZY_172 | Minor groove platform | ||
| IL_5LZY_274 | No text annotation | ||
| IL_5LZY_179 | No text annotation | ||
| IL_5LZY_181 | Isolated non-canonical cWW contact | ||
| IL_5LZY_182 | Double sheared with non-canonical cWW | ||
| IL_5LZY_184 | No text annotation | ||
| IL_5LZY_185 | Single bulged A | ||
| IL_5LZY_186 | No text annotation | ||
| IL_5LZY_193 | C-loop with extra cWW pair | ||
| IL_5LZY_275 | Other IL | ||
| IL_5LZY_195 | Isolated non-canonical cWW pair | ||
| IL_5LZY_205 | Isolated non-canonical cWW pair | ||
| IL_5LZY_276 | Tandem non-canonical cWW pairs | ||
| IL_5LZY_206 | Not an internal loop | ||
| IL_5LZY_207 | No text annotation | ||
| IL_5LZY_212 | Isolated non-canonical cWW pair | ||
| IL_5LZY_277 | Triple non-canonical cWW pairs | ||
| IL_5LZY_233 | No text annotation | ||
| IL_5LZY_234 | No text annotation | ||
| IL_5LZY_244 | Single bulged G | ||
| IL_5LZY_260 | No text annotation | ||
| IL_5LZY_261 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5LZY_001 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation | ||
| J3_5LZY_033 | 1/5/196:199, 1/5/215:228, 1/5/240:244 | No text annotation | ||
| J3_5LZY_034 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_5LZY_002 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_5LZY_035 | 1/5/380:390, 1/5/401:415, 1/8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_5LZY_036 | 1/5/451:455, 1/5/701:705, 1/5/1292:1296 | No text annotation | ||
| J3_5LZY_003 | 1/5/982:984, 1/5/1070:1074, 1/5/1236:1273 | No text annotation | ||
| J3_5LZY_037 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation | homologous J3_8P9A_049 J3_46658.1 | |
| J3_5LZY_005 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_5LZY_006 | 1/5/1726:1727, 1/5/1802:1806, 1/5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_5LZY_008 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_5LZY_009 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_5LZY_010 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_5LZY_039 | 1/5/2451:2456, 1/5/2465:2476, 1/5/2501:2508 | No text annotation | ||
| J3_5LZY_011 | 1/5/2551:2555, 1/5/2572:2575, 1/5/2757:2767 | No text annotation | ||
| J3_5LZY_012 | 1/5/2575:2576, 1/5/2585:2589, 1/5/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_5LZY_040 | 1/5/2598:2602, 1/5/2737:2738, 1/5/2742:2747 | No text annotation | homologous J3_8C3A_055 NA | |
| J3_5LZY_013 | 1/5/3937:3939, 1/5/4074:4078, 1/5/4168:4173 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_5LZY_014 | 1/5/4091:4094, 1/5/4114:4129, 1/5/4155:4158 | No text annotation | homologous J3_8P9A_060 J3_76247.1 | |
| J3_5LZY_041 | 1/5/4228:4230, 1/5/4331:4342, 1/5/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_5LZY_015 | 1/5/4241:4243, 1/5/4267:4269, 1/5/4278:4283 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_5LZY_016 | 1/5/4463:4466, 1/5/4491:4493, 1/5/4507:4513 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_5LZY_042 | 1/5/4749:4754, 1/5/4879:4883, 1/5/4936:4951 | No text annotation | ||
| J3_5LZY_017 | 1/5/4970:4972, 1/5/4986:4991, 1/5/5060:5063 | No text annotation | ||
| J3_5LZY_018 | 1/7/9:14, 1/7/65:66, 1/7/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_5LZY_019 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_5LZY_020 | 1/9/40:41, 1/9/481:487, 1/9/512:514 | No text annotation | geometric J3_4V88_078 NA | |
| J3_5LZY_043 | 1/9/40:47, 1/9/479:487, 1/9/512:514 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_5LZY_021 | 1/9/682:685, 1/9/917:922, 1/9/1022:1023 | No text annotation | ||
| J3_5LZY_044 | 1/9/682:685, 1/9/917:923, 1/9/1019:1023 | No text annotation | ||
| J3_5LZY_022 | 1/9/816:819, 1/9/829:831, 1/9/843:848 | No text annotation | homologous J3_4V88_032 NA | |
| J3_5LZY_023 | 1/9/938:941, 1/9/985:993, 1/9/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_5LZY_024 | 1/9/1094:1096, 1/9/1136:1140, 1/9/1147:1151 | No text annotation | ||
| J3_5LZY_025 | 1/9/1218:1221, 1/9/1645:1651, 1/9/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_5LZY_026 | 1/9/1225:1228, 1/9/1530:1532, 1/9/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
| J3_5LZY_027 | 1/9/1237:1244, 1/9/1255:1266, 1/9/1516:1520 | No text annotation | homologous J3_8P9A_078 J3_88451.1 | |
| J3_5LZY_028 | 1/9/1272:1277, 1/9/1320:1324, 1/9/1504:1510 | No text annotation | homologous J3_4V88_038 NA | |
| J3_5LZY_029 | 1/9/1340:1345, 1/9/1384:1389, 1/9/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_5LZY_030 | 1/9/1350:1351, 1/9/1360:1363, 1/9/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_5LZY_031 | 1/9/1391:1395, 1/9/1450:1456, 1/9/1470:1479 | No text annotation | ||
| J3_5LZY_032 | 1/9/1532:1536, 1/9/1597:1604, 1/9/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J4_5LZY_001 | 1/2/7:10, 1/2/25:27, 1/2/43:49, 1/2/65:66 | tRNA junction | homologous J4_5AXM_001 J4_58311.1 | |
| J4_5LZY_003 | 1/5/111:112, 1/5/278:283, 1/5/304:310, 1/5/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_5LZY_004 | 1/5/196:199, 1/5/215:222, 1/5/226:228, 1/5/240:244 | No text annotation | ||
| J4_5LZY_005 | 1/5/712:713, 1/5/955:962, 1/5/970:982, 1/5/1273:1284 | No text annotation | ||
| J4_5LZY_006 | 1/5/2365:2371, 1/5/2389:2391, 1/5/2824:2829, 1/5/3856:3857 | No text annotation | ||
| J4_5LZY_007 | 1/5/2406:2410, 1/5/2434:2439, 1/5/2538:2539, 1/5/2777:2784 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_5LZY_008 | 1/5/2618:2619, 1/5/2637:2642, 1/5/2692:2698, 1/5/2718:2719 | No text annotation | ||
| J4_5LZY_009 | 1/5/3634:3638, 1/5/3650:3654, 1/5/3690:3694, 1/5/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_5LZY_010 | 1/5/3696:3698, 1/5/3752:3753, 1/5/3771:3780, 1/5/3814:3819 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_5LZY_011 | 1/5/4231:4235, 1/5/4289:4291, 1/5/4318:4319, 1/5/4328:4330 | No text annotation | ||
| J4_5LZY_012 | 1/5/4231:4235, 1/5/4289:4293, 1/5/4317:4319, 1/5/4328:4330 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_5LZY_013 | 1/5/4587:4590, 1/5/4620:4621, 1/5/4676:4678, 1/5/4712:4715 | No text annotation | ||
| J4_5LZY_014 | 1/9/98:106, 1/9/355:357, 1/9/405:409, 1/9/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_5LZY_015 | 1/9/671:673, 1/9/1032:1037, 1/9/1078:1089, 1/9/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J5_5LZY_001 | 1/5/20:21, 1/8/35:42, 1/8/101:106, 1/8/113:114, 1/8/136:137 | No text annotation | ||
| J5_5LZY_002 | 1/5/1335:1340, 1/5/1516:1519, 1/5/1658:1661, 1/5/2288:2290, 1/5/2345:2351 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_5LZY_003 | 1/5/2855:2863, 1/5/2887:2888, 1/5/3613:3614, 1/5/3618:3626, 1/5/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_5LZY_010 | 1/5/3903:3910, 1/5/4392:4400, 1/5/4444:4453, 1/5/4528:4534, 1/5/4552:4557 | No text annotation | ||
| J5_5LZY_005 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4228, 1/5/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_5LZY_006 | 1/9/30:34, 1/9/521:527, 1/9/558:563, 1/9/592:595, 1/9/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_5LZY_007 | 1/9/30:34, 1/9/521:527, 1/9/558:565, 1/9/585:595, 1/9/641:644 | No text annotation | ||
| J5_5LZY_011 | 1/9/53:56, 1/9/89:96, 1/9/434:436, 1/9/457:459, 1/9/470:474 | No text annotation | homologous J5_8CRE_020 J5_58574.1 | |
| J5_5LZY_009 | 1/9/123:129, 1/9/183:185, 1/9/214:215, 1/9/310:312, 1/9/337:341 | No text annotation | ||
| J6_5LZY_001 | 1/5/21:26, 1/5/57:67, 1/5/74:78, 1/5/105:109, 1/5/332:339, 1/8/33:35 | No text annotation | ||
| J6_5LZY_002 | 1/5/1352:1355, 1/5/1384:1388, 1/5/1395:1399, 1/5/1418:1421, 1/5/1464:1466, 1/5/1499:1504 | No text annotation | ||
| J6_5LZY_003 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4230, 1/5/4331:4342, 1/5/4370:4381 | No text annotation | ||
| J7_5LZY_001 | 1/5/1666:1671, 1/5/1684:1685, 1/5/1852:1855, 1/5/1879:1884, 1/5/1895:1899, 1/5/2077:2078, 1/5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5LZY_004 | No text annotation | ||
| J3_5LZY_038 | No text annotation | ||
| J3_5LZY_007 | No text annotation | ||
| J4_5LZY_002 | tRNA junction | ||
| J5_5LZY_004 | No text annotation | ||
| J5_5LZY_008 | No text annotation |
Coloring options: