HL_5LZY_031

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

5LZY|1|5|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_031 not in the Motif Atlas

Geometric match to HL_5TBW_023

Geometric discrepancy: 0.2942

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LZY|1|5|C|1763
5LZY|1|5|G|1764
5LZY|1|5|A|1765
5LZY|1|5|A|1766
5LZY|1|5|A|1767
5LZY|1|5|C|1768
5LZY|1|5|G|1769

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain SS

uS13