HL_5LZY_040

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

5LZY|1|5|G|2421, 5LZY|1|5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_040 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2009

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5LZY|1|5|A|2420
5LZY|1|5|G|2421
5LZY|1|5|C|2422
5LZY|1|5|A|2423
5LZY|1|5|G|2424
5LZY|1|5|U|2425
5LZY|1|5|U|2426

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39