HL_5LZY_041

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_041 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.1763

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LZY|1|5|C|2458
5LZY|1|5|G|2459
5LZY|1|5|A|2460
5LZY|1|5|G|2461
5LZY|1|5|C|2462
5LZY|1|5|G|2463

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain N

Ribosomal protein L15

Chain j

eL37