HL_5LZY_077

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

5LZY|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_077 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.129

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

5LZY|1|5|G|4975
5LZY|1|5|U|4976
5LZY|1|5|A|4977
5LZY|1|5|G|4978
5LZY|1|5|A|4979
5LZY|1|5|C|4980
5LZY|1|5|G|4981
5LZY|1|5|A|4982
5LZY|1|5|C|4983

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22