HL_5LZY_097

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_097 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1559

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5LZY|1|9|A|569
5LZY|1|9|C|570
5LZY|1|9|U|571
5LZY|1|9|U|572
5LZY|1|9|U|573
5LZY|1|9|A|574
5LZY|1|9|A|575
5LZY|1|9|A|576
5LZY|1|9|U|577
5LZY|1|9|C|578
5LZY|1|9|C|579
5LZY|1|9|U|580
5LZY|1|9|U|581

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

eS24