HL_5LZY_099

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

5LZY|1|9|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_099 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.0943

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

5LZY|1|9|U|820
5LZY|1|9|G|821
5LZY|1|9|U|822
5LZY|1|9|U|823
5LZY|1|9|C|824
5LZY|1|9|A|825
5LZY|1|9|A|826
5LZY|1|9|A|827
5LZY|1|9|G|828

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

eS24