HL_5LZY_129

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

5LZY|1|9|U|1300, 5LZY|1|9|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZY_129 not in the Motif Atlas

Homologous match to HL_8CRE_217

Geometric discrepancy: 0.2183

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5LZY|1|9|A|1295
5LZY|1|9|U|1296
5LZY|1|9|U|1297
5LZY|1|9|G|1298
5LZY|1|9|A|1299
5LZY|1|9|U|1300
5LZY|1|9|A|1301
5LZY|1|9|G|1302
5LZY|1|9|C|1303
5LZY|1|9|U|1304

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain dd

uS14

Chain ff

eS31