HL_5LZZ_029

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5LZZ|1|5|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZZ_029 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0842

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZZ|1|5|G|1627
5LZZ|1|5|C|1628
5LZZ|1|5|G|1629
5LZZ|1|5|A|1630
5LZZ|1|5|A|1631
5LZZ|1|5|A|1632
5LZZ|1|5|G|1633
5LZZ|1|5|A|1634
5LZZ|1|5|C|1635

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37