HL_5LZZ_068

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZZ_068 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1153

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZZ|1|5|C|4417
5LZZ|1|5|G|4418
5LZZ|1|5|U|4419
5LZZ|1|5|U|4420
5LZZ|1|5|C|4421
5LZZ|1|5|A|4422
5LZZ|1|5|U|4423
5LZZ|1|5|A|4424
5LZZ|1|5|G|4425

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain ii

Protein pelota homolog

Chain m

eL40