HL_5LZZ_069

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

5LZZ|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZZ_069 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0953

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5LZZ|1|5|A|4474
5LZZ|1|5|G|4475
5LZZ|1|5|C|4476
5LZZ|1|5|A|4477
5LZZ|1|5|G|4478
5LZZ|1|5|A|4479
5LZZ|1|5|A|4480
5LZZ|1|5|U|4481

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain m

eL40