HL_5LZZ_114

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZZ_114 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.1308

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LZZ|1|9|C|1565
5LZZ|1|9|G|1566
5LZZ|1|9|G|1567
5LZZ|1|9|C|1568
5LZZ|1|9|A|1569
5LZZ|1|9|G|1570

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain SS

uS13

Chain TT

eS19