HL_5M1J_001
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 5M1J|1|14|A|40
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_001 not in the Motif Atlas
- Geometric match to HL_4WF9_006
- Geometric discrepancy: 0.0855
- The information below is about HL_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5M1J|1|14|U|38
5M1J|1|14|A|39
5M1J|1|14|A|40
5M1J|1|14|G|41
5M1J|1|14|C|42
5M1J|1|14|A|43
5M1J|1|14|U|44
5M1J|1|14|A|45
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain L5
- 60S ribosomal protein L13-A
- Chain N5
- 60S ribosomal protein L15-A
- Chain a5
- 60S ribosomal protein L28
- Chain o5
- 60S ribosomal protein L42-B
Coloring options: