5M1J Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5M1J_001 | 1/14/38:45 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_5M1J_002 | 1/14/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_5M1J_003 | 1/14/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_5M1J_004 | 1/14/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_5M1J_005 | 1/14/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_5M1J_006 | 1/14/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_5M1J_007 | 1/14/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_5M1J_008 | 1/14/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_5M1J_009 | 1/14/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_5M1J_010 | 1/14/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_5M1J_011 | 1/14/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_5M1J_125 | 1/14/543:548 | No text annotation | homologous HL_8P9A_231 HL_13189.1 | |
| HL_5M1J_013 | 1/14/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_5M1J_014 | 1/14/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_5M1J_119 | 1/14/687:693 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_5M1J_016 | 1/14/707:712 | GNRA | homologous HL_5TBW_016 NA | |
| HL_5M1J_017 | 1/14/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_5M1J_018 | 1/14/763:768 | No text annotation | homologous HL_5TBW_018 NA | |
| HL_5M1J_019 | 1/14/844:849 | GNRA | homologous HL_8C3A_019 NA | |
| HL_5M1J_020 | 1/14/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_5M1J_021 | 1/14/910:918 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_5M1J_022 | 1/14/958:963 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_5M1J_023 | 1/14/1023:1029 | GNRA | homologous HL_5TBW_023 NA | |
| HL_5M1J_024 | 1/14/1076:1083 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_5M1J_025 | 1/14/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_5M1J_026 | 1/14/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_5M1J_027 | 1/14/1239:1249 | No text annotation | homologous HL_5TBW_027 NA | |
| HL_5M1J_028 | 1/14/1267:1274 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_5M1J_029 | 1/14/1347:1357 | No text annotation | homologous HL_5TBW_029 NA | |
| HL_5M1J_030 | 1/14/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_5M1J_031 | 1/14/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_5M1J_032 | 1/14/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_5M1J_033 | 1/14/1544:1549 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_5M1J_034 | 1/14/1566:1572 | No text annotation | homologous HL_5TBW_034 NA | |
| HL_5M1J_035 | 1/14/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_5M1J_036 | 1/14/1634:1639 | GNRA | homologous HL_5TBW_036 NA | |
| HL_5M1J_037 | 1/14/1680:1688 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_5M1J_038 | 1/14/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_5M1J_039 | 1/14/1759:1766 | No text annotation | homologous HL_8P9A_150 HL_25967.2 | |
| HL_5M1J_040 | 1/14/1792:1796 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_5M1J_041 | 1/14/1844:1851 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_5M1J_042 | 1/14/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_5M1J_043 | 1/14/1923:1928 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_5M1J_120 | 1/14/2064:2072 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_5M1J_045 | 1/14/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_5M1J_046 | 1/14/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_5M1J_047 | 1/14/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_5M1J_048 | 1/14/2220:2225 | GNRA | homologous HL_5TBW_048 NA | |
| HL_5M1J_049 | 1/14/2253:2263 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_5M1J_050 | 1/14/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_5M1J_051 | 1/14/2369:2378 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_5M1J_052 | 1/14/2470:2475 | GNRA | geometric HL_7RQB_016 NA | |
| HL_5M1J_053 | 1/14/2534:2545 | tRNA D-loop | geometric HL_7UQ6_001 HL_20811.4 | |
| HL_5M1J_054 | 1/14/2568:2573 | No text annotation | homologous HL_5TBW_053 NA | |
| HL_5M1J_055 | 1/14/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_5M1J_056 | 1/14/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_5M1J_057 | 1/14/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_5M1J_058 | 1/14/2693:2700 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_5M1J_059 | 1/14/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_5M1J_060 | 1/14/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_5M1J_061 | 1/14/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_5M1J_062 | 1/14/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_5M1J_063 | 1/14/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_5M1J_122 | 1/14/2918:2928 | No text annotation | ||
| HL_5M1J_064 | 1/14/2920:2926 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_5M1J_065 | 1/14/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_5M1J_066 | 1/14/3025:3030 | GNRA | geometric HL_5B2T_003 HL_37824.8 | |
| HL_5M1J_067 | 1/14/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_5M1J_068 | 1/14/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_5M1J_069 | 1/14/3194:3197 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_5M1J_070 | 1/14/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_5M1J_071 | 1/14/3303:3311 | No text annotation | geometric HL_5J7L_201 HL_64690.6 | |
| HL_5M1J_072 | 1/14/3350:3353 | No text annotation | ||
| HL_5M1J_073 | 1/22/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_5M1J_074 | 1/22/70:81 | No text annotation | homologous HL_4V88_187 NA | |
| HL_5M1J_075 | 1/22/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_5M1J_076 | 1/22/190:195 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_5M1J_077 | 1/22/230:235 | UNCG | geometric HL_5J7L_171 HL_34617.5 | |
| HL_5M1J_078 | 1/22/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_5M1J_079 | 1/22/276:279 | Mini UNCG | geometric HL_5U30_001 HL_48778.2 | |
| HL_5M1J_080 | 1/22/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_5M1J_081 | 1/22/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_5M1J_082 | 1/22/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_5M1J_083 | 1/22/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_5M1J_084 | 1/22/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_5M1J_085 | 1/22/491:496 | No text annotation | homologous HL_4V88_198 NA | |
| HL_5M1J_086 | 1/22/520:532 | No text annotation | geometric HL_4V88_199 NA | |
| HL_5M1J_087 | 1/22/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_5M1J_089 | 1/22/703:735 | No text annotation | ||
| HL_5M1J_090 | 1/22/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_5M1J_091 | 1/22/777:783 | No text annotation | homologous HL_8P9A_207 HL_48417.6 | |
| HL_5M1J_092 | 1/22/829:843 | Pseudoknot geometry | homologous HL_4V88_205 NA | |
| HL_5M1J_093 | 1/22/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_5M1J_094 | 1/22/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_5M1J_095 | 1/22/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_5M1J_096 | 1/22/1055:1064 | No text annotation | homologous HL_8P9A_212 HL_97917.2 | |
| HL_5M1J_097 | 1/22/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_5M1J_098 | 1/22/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_5M1J_099 | 1/22/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_5M1J_100 | 1/22/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_5M1J_101 | 1/22/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_5M1J_102 | 1/22/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_5M1J_103 | 1/22/1359:1364 | No text annotation | homologous HL_4V88_216 NA | |
| HL_5M1J_104 | 1/22/1396:1402 | No text annotation | geometric HL_5J7L_014 HL_10453.3 | |
| HL_5M1J_105 | 1/22/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_5M1J_106 | 1/22/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_5M1J_107 | 1/22/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_5M1J_108 | 1/22/1687:1714 | No text annotation | ||
| HL_5M1J_109 | 1/22/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_5M1J_110 | 1/34/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_5M1J_111 | 1/34/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_5M1J_123 | 1/44/47:56 | Pseudoknot with intercalation | geometric HL_5TBW_230 NA | |
| HL_5M1J_112 | 1/44/69:89 | No text annotation | homologous HL_8P9A_187 HL_51921.1 | |
| HL_5M1J_113 | 1/44/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_5M1J_114 | 1/44/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_5M1J_115 | 1/A3/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_5M1J_124 | 1/A3/31:39 | tRNA anticodon loop | homologous HL_1FIR_005 HL_06059.7 | |
| HL_5M1J_117 | 1/A3/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5M1J_012 | No text annotation | ||
| HL_5M1J_118 | No text annotation | ||
| HL_5M1J_015 | No text annotation | ||
| HL_5M1J_044 | No text annotation | ||
| HL_5M1J_121 | No text annotation | ||
| HL_5M1J_088 | No text annotation | ||
| HL_5M1J_116 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5M1J_002 | 1/14/7:8, 1/44/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_5M1J_003 | 1/14/12:15, 1/44/144:146 | No text annotation | geometric IL_3LA5_001 NA | |
| IL_5M1J_004 | 1/14/27:28, 1/14/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_5M1J_005 | 1/14/31:38, 1/14/45:53 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_5M1J_006 | 1/14/82:89, 1/14/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_5M1J_007 | 1/14/123:124, 1/14/144:149 | No text annotation | homologous IL_5TBW_007 NA | |
| IL_5M1J_008 | 1/14/125:127, 1/14/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_5M1J_009 | 1/14/163:165, 1/14/257:258 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_5M1J_010 | 1/14/169:170, 1/14/248:253 | No text annotation | homologous IL_5TBW_010 NA | |
| IL_5M1J_231 | 1/14/177:178, 1/14/238:241 | No text annotation | geometric IL_5TBW_501 NA | |
| IL_5M1J_012 | 1/14/189:191, 1/14/204:205 | Single bulged U | geometric IL_4V9F_029 IL_89505.4 | |
| IL_5M1J_013 | 1/14/337:339, 1/44/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_5M1J_014 | 1/14/376:379, 1/14/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_5M1J_015 | 1/14/404:410, 1/44/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_5M1J_016 | 1/14/429:431, 1/14/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_5M1J_018 | 1/14/512:513, 1/14/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_5M1J_019 | 1/14/517:525, 1/14/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_5M1J_020 | 1/14/531:538, 1/14/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_5M1J_021 | 1/14/668:670, 1/14/792:794 | Isolated non-canonical cWW pair | homologous IL_5TBW_021 NA | |
| IL_5M1J_022 | 1/14/680:684, 1/14/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_5M1J_023 | 1/14/725:728, 1/14/741:745 | UAA/GAN | homologous IL_5TBW_023 NA | |
| IL_5M1J_024 | 1/14/752:753, 1/14/779:781 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_5M1J_025 | 1/14/755:756, 1/14/775:777 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_5M1J_026 | 1/14/758:763, 1/14/768:773 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_5M1J_027 | 1/14/803:805, 1/14/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_5M1J_028 | 1/14/805:809, 1/14/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_5M1J_029 | 1/14/833:834, 1/14/859:861 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_5M1J_030 | 1/14/834:838, 1/14/855:859 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_5M1J_031 | 1/14/869:872, 1/14/888:890 | Major groove platform with extra cWW | geometric IL_8C3A_034 NA | |
| IL_5M1J_032 | 1/14/873:875, 1/14/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_5M1J_033 | 1/14/907:909, 1/14/919:923 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_5M1J_034 | 1/14/954:956, 1/14/965:967 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_5M1J_035 | 1/14/969:970, 1/14/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_5M1J_233 | 1/14/977:981, 1/14/1102:1104 | No text annotation | homologous IL_8P9A_264 IL_25463.1 | |
| IL_5M1J_037 | 1/14/983:985, 1/14/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_5M1J_038 | 1/14/991:997, 1/14/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_5M1J_039 | 1/14/997:998, 1/14/1050:1052 | Minor groove platform | homologous IL_5TBW_039 NA | |
| IL_5M1J_040 | 1/14/999:1004, 1/14/1046:1049 | C-loop with bulged stacked A's | homologous IL_5TBW_040 NA | |
| IL_5M1J_041 | 1/14/1006:1009, 1/14/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_5M1J_042 | 1/14/1009:1011, 1/14/1039:1041 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_5M1J_268 | 1/14/1014:1018, 1/14/1034:1036 | No text annotation | homologous IL_8CRE_477 IL_31737.3 | |
| IL_5M1J_044 | 1/14/1069:1071, 1/14/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_5M1J_045 | 1/14/1074:1076, 1/14/1083:1084 | Single bulged A | geometric IL_5TBW_045 NA | |
| IL_5M1J_046 | 1/14/1120:1122, 1/14/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_5M1J_047 | 1/14/1167:1171, 1/14/1328:1332 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_5M1J_048 | 1/14/1173:1180, 1/14/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_5M1J_049 | 1/14/1180:1182, 1/14/1324:1325 | Single bulged U | homologous IL_8C3A_053 NA | |
| IL_5M1J_050 | 1/14/1187:1194, 1/14/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_5M1J_051 | 1/14/1194:1205, 1/14/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_5M1J_052 | 1/14/1207:1209, 1/14/1296:1297 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_5M1J_053 | 1/14/1218:1226, 1/14/1283:1287 | Kink-turn | homologous IL_5TBW_054 NA | |
| IL_5M1J_054 | 1/14/1234:1239, 1/14/1249:1254 | No text annotation | ||
| IL_5M1J_055 | 1/14/1262:1266, 1/14/1275:1277 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
| IL_5M1J_056 | 1/14/1376:1378, 1/14/1428:1431 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_5M1J_057 | 1/14/1385:1387, 1/14/1420:1421 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_5M1J_058 | 1/14/1388:1395, 1/14/1415:1419 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_5M1J_059 | 1/14/1398:1400, 1/14/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_5M1J_060 | 1/14/1444:1450, 1/14/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_5M1J_235 | 1/14/1501:1505, 1/14/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.11 | |
| IL_5M1J_062 | 1/14/1532:1536, 1/14/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_5M1J_236 | 1/14/1564:1566, 1/14/1572:1576 | No text annotation | ||
| IL_5M1J_064 | 1/14/1618:1621, 1/14/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_5M1J_269 | 1/14/1623:1624, 1/14/1819:1822 | Major groove platform | geometric IL_4WF9_094 IL_07039.3 | |
| IL_5M1J_066 | 1/14/1626:1631, 1/14/1811:1817 | No text annotation | ||
| IL_5M1J_067 | 1/14/1645:1649, 1/14/1806:1810 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_5M1J_068 | 1/14/1661:1663, 1/14/1786:1788 | Isolated non-canonical cWW pair | homologous IL_5TBW_068 NA | |
| IL_5M1J_069 | 1/14/1669:1670, 1/14/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_5M1J_070 | 1/14/1670:1671, 1/14/1776:1778 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_5M1J_071 | 1/14/1694:1698, 1/14/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_5M1J_072 | 1/14/1702:1707, 1/14/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_5M1J_073 | 1/14/1711:1717, 1/14/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_5M1J_074 | 1/14/1883:1889, 1/14/2346:2349 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_5M1J_075 | 1/14/1895:1897, 1/14/2338:2340 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_5M1J_076 | 1/14/1898:1901, 1/14/2336:2337 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_5M1J_238 | 1/14/1898:1906, 1/14/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_5M1J_077 | 1/14/1901:1906, 1/14/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_5M1J_078 | 1/14/1918:1923, 1/14/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_5M1J_079 | 1/14/1940:1942, 1/14/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_5M1J_080 | 1/14/1947:1950, 1/14/2096:2101 | No text annotation | ||
| IL_5M1J_270 | 1/14/1947:1956, 1/14/2085:2101 | No text annotation | ||
| IL_5M1J_081 | 1/14/1950:1956, 1/14/2085:2096 | No text annotation | ||
| IL_5M1J_082 | 1/14/1965:1968, 1/14/2054:2057 | No text annotation | ||
| IL_5M1J_083 | 1/14/1971:1976, 1/14/2046:2051 | No text annotation | ||
| IL_5M1J_240 | 1/14/1981:1982, 1/14/2039:2041 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_5M1J_241 | 1/14/2128:2129, 1/14/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_5M1J_242 | 1/14/2156:2161, 1/14/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_5M1J_087 | 1/14/2196:2199, 1/14/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_5M1J_243 | 1/14/2200:2201, 1/14/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_5M1J_089 | 1/14/2204:2210, 1/14/2235:2238 | No text annotation | ||
| IL_5M1J_090 | 1/14/2211:2217, 1/14/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_5M1J_091 | 1/14/2276:2277, 1/14/2307:2310 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_5M1J_092 | 1/14/2277:2288, 1/14/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_5M1J_093 | 1/14/2391:2394, 1/14/2986:2988 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_5M1J_094 | 1/14/2396:2398, 1/14/2981:2984 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_5M1J_095 | 1/14/2409:2411, 1/14/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_5M1J_096 | 1/14/2412:2413, 1/14/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_5M1J_097 | 1/14/2423:2425, 1/14/2604:2607 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_5M1J_271 | 1/14/2438:2441, 1/14/2505:2508 | No text annotation | geometric IL_8C3A_403 NA | |
| IL_5M1J_272 | 1/14/2442:2462, 1/14/2493:2504 | No text annotation | ||
| IL_5M1J_099 | 1/14/2443:2462, 1/14/2493:2504 | No text annotation | ||
| IL_5M1J_100 | 1/14/2466:2469, 1/14/2476:2489 | No text annotation | geometric IL_1MZP_003 IL_75283.2 | |
| IL_5M1J_101 | 1/14/2520:2526, 1/14/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_5M1J_102 | 1/14/2614:2615, 1/14/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_5M1J_103 | 1/14/2666:2668, 1/14/2686:2690 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_5M1J_104 | 1/14/2718:2721, 1/14/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_5M1J_105 | 1/14/2770:2773, 1/14/2787:2788 | Single stack bend with bulge | homologous IL_5TBW_101 NA | |
| IL_5M1J_106 | 1/14/2823:2824, 1/14/2865:2867 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_5M1J_246 | 1/14/2823:2826, 1/14/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_5M1J_107 | 1/14/2824:2826, 1/14/2863:2865 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
| IL_5M1J_108 | 1/14/2826:2828, 1/14/2862:2863 | Major groove platform | homologous IL_8C3A_112 NA | |
| IL_5M1J_109 | 1/14/2828:2830, 1/14/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_5M1J_110 | 1/14/2835:2839, 1/14/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_5M1J_111 | 1/14/2876:2877, 1/14/2949:2951 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_5M1J_112 | 1/14/2879:2881, 1/14/2943:2947 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_5M1J_113 | 1/14/2881:2882, 1/14/2940:2943 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_5M1J_114 | 1/14/2889:2891, 1/14/2912:2914 | Isolated non-canonical cWW pair | homologous IL_5TBW_110 NA | |
| IL_5M1J_247 | 1/14/2889:2892, 1/14/2909:2914 | No text annotation | homologous IL_8C3A_486 NA | |
| IL_5M1J_115 | 1/14/2891:2892, 1/14/2909:2912 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
| IL_5M1J_116 | 1/14/2918:2920, 1/14/2926:2928 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_5M1J_117 | 1/14/2960:2961, 1/14/2970:2972 | Single bulged A | geometric IL_1U9S_001 IL_31462.7 | |
| IL_5M1J_118 | 1/14/3004:3007, 1/14/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_5M1J_119 | 1/14/3012:3014, 1/14/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_5M1J_120 | 1/14/3018:3025, 1/14/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
| IL_5M1J_121 | 1/14/3047:3051, 1/14/3091:3094 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_5M1J_122 | 1/14/3054:3059, 1/14/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_5M1J_123 | 1/14/3063:3064, 1/14/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_5M1J_273 | 1/14/3103:3107, 1/14/3127:3131 | UAA/GAN | homologous IL_8CRE_129 IL_38507.2 | |
| IL_5M1J_274 | 1/14/3164:3166, 1/14/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8CRE_130 IL_87907.2 | |
| IL_5M1J_126 | 1/14/3177:3179, 1/14/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_5M1J_127 | 1/14/3179:3188, 1/14/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_5M1J_128 | 1/14/3193:3194, 1/14/3197:3199 | Single bulged U | homologous IL_5TBW_125 NA | |
| IL_5M1J_129 | 1/14/3225:3229, 1/14/3258:3260 | No text annotation | homologous IL_5TBW_126 NA | |
| IL_5M1J_130 | 1/14/3233:3235, 1/14/3252:3254 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_5M1J_131 | 1/14/3235:3238, 1/14/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_5M1J_132 | 1/14/3300:3303, 1/14/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_5M1J_133 | 1/14/3318:3320, 1/14/3387:3388 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_5M1J_134 | 1/14/3324:3325, 1/14/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_5M1J_135 | 1/14/3328:3330, 1/14/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_5M1J_136 | 1/14/3332:3337, 1/14/3367:3371 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_5M1J_137 | 1/14/3340:3342, 1/14/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_5M1J_138 | 1/14/3342:3345, 1/14/3360:3363 | Double sheared; A in syn | geometric IL_5TBW_135 NA | |
| IL_5M1J_139 | 1/14/3349:3350, 1/14/3353:3356 | Multiple bulged bases | homologous IL_5TBW_136 NA | |
| IL_5M1J_140 | 1/22/24:26, 1/22/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_5M1J_141 | 1/22/35:37, 1/22/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_5M1J_142 | 1/22/37:41, 1/22/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_5M1J_143 | 1/22/42:48, 1/22/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_5M1J_144 | 1/22/50:52, 1/22/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_5M1J_145 | 1/22/58:63, 1/22/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_5M1J_146 | 1/22/64:69, 1/22/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_5M1J_147 | 1/22/109:113, 1/22/301:305 | Triple non-canonical cWW pairs | geometric IL_8VMB_003 IL_49751.4 | |
| IL_5M1J_148 | 1/22/113:116, 1/22/300:301 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.5 | |
| IL_5M1J_149 | 1/22/117:122, 1/22/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_5M1J_150 | 1/22/143:149, 1/22/165:172 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_5M1J_249 | 1/22/150:152, 1/22/162:164 | No text annotation | homologous IL_8P9A_384 IL_44465.1 | |
| IL_5M1J_152 | 1/22/186:190, 1/22/195:199 | Triple sheared | geometric IL_7A0S_056 IL_17948.2 | |
| IL_5M1J_153 | 1/22/204:206, 1/22/259:263 | Major groove platform with extra cWW | geometric IL_4V88_397 NA | |
| IL_5M1J_154 | 1/22/206:208, 1/22/257:259 | Isolated non-canonical cWW pair | homologous IL_4V88_398 NA | |
| IL_5M1J_155 | 1/22/265:267, 1/22/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_5M1J_156 | 1/22/270:273, 1/22/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_5M1J_157 | 1/22/275:276, 1/22/279:281 | Single bulged U | homologous IL_4V88_401 NA | |
| IL_5M1J_158 | 1/22/311:316, 1/22/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_5M1J_159 | 1/22/318:323, 1/22/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_5M1J_160 | 1/22/363:365, 1/22/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_5M1J_161 | 1/22/389:391, 1/22/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_5M1J_162 | 1/22/411:413, 1/22/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_5M1J_163 | 1/22/439:441, 1/22/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_5M1J_164 | 1/22/443:448, 1/22/458:461 | C-loop with extra cWW pair | homologous IL_4V88_408 NA | |
| IL_5M1J_165 | 1/22/480:487, 1/22/500:508 | No text annotation | ||
| IL_5M1J_253 | 1/22/480:491, 1/22/496:508 | No text annotation | ||
| IL_5M1J_254 | 1/22/517:520, 1/22/532:535 | Double sheared | geometric IL_4LFB_060 IL_09705.15 | |
| IL_5M1J_167 | 1/22/550:557, 1/22/587:588 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_5M1J_168 | 1/22/557:559, 1/22/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_5M1J_169 | 1/22/562:568, 1/22/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_5M1J_170 | 1/22/624:626, 1/22/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_5M1J_171 | 1/22/627:631, 1/22/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_5M1J_172 | 1/22/645:650, 1/22/684:689 | No text annotation | geometric IL_4LFB_030 NA | |
| IL_5M1J_173 | 1/22/700:701, 1/22/737:739 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_5M1J_174 | 1/22/746:747, 1/22/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_5M1J_175 | 1/22/748:750, 1/22/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_5M1J_176 | 1/22/751:759, 1/22/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_5M1J_177 | 1/22/865:866, 1/22/962:965 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_5M1J_257 | 1/22/868:869, 1/22/958:960 | Single bulged U | geometric IL_2PJP_001 IL_89505.4 | |
| IL_5M1J_179 | 1/22/871:874, 1/22/953:956 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
| IL_5M1J_180 | 1/22/874:878, 1/22/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_5M1J_181 | 1/22/885:888, 1/22/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_5M1J_182 | 1/22/893:899, 1/22/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_5M1J_183 | 1/22/985:990, 1/22/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_5M1J_184 | 1/22/990:994, 1/22/1010:1014 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_5M1J_185 | 1/22/1034:1036, 1/22/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_5M1J_186 | 1/22/1041:1044, 1/22/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_5M1J_187 | 1/22/1051:1053, 1/22/1066:1067 | Single bulged U | geometric IL_5TBW_086 NA | |
| IL_5M1J_188 | 1/22/1111:1118, 1/22/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_5M1J_189 | 1/22/1146:1147, 1/22/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_5M1J_190 | 1/22/1149:1151, 1/22/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_5M1J_191 | 1/22/1157:1160, 1/22/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_5M1J_192 | 1/22/1173:1175, 1/22/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_5M1J_193 | 1/22/1178:1179, 1/22/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_5M1J_194 | 1/22/1213:1215, 1/22/1448:1450 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_87907.2 | |
| IL_5M1J_195 | 1/22/1223:1230, 1/22/1257:1260 | No text annotation | ||
| IL_5M1J_275 | 1/22/1224:1233, 1/22/1252:1259 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_5M1J_196 | 1/22/1230:1233, 1/22/1252:1257 | No text annotation | ||
| IL_5M1J_259 | 1/22/1233:1236, 1/22/1249:1252 | No text annotation | ||
| IL_5M1J_197 | 1/22/1234:1236, 1/22/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_5M1J_198 | 1/22/1268:1270, 1/22/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_5M1J_199 | 1/22/1272:1276, 1/22/1436:1438 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_5M1J_260 | 1/22/1272:1278, 1/22/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_5M1J_200 | 1/22/1276:1278, 1/22/1430:1436 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_5M1J_201 | 1/22/1280:1281, 1/22/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_5M1J_202 | 1/22/1290:1292, 1/22/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_5M1J_203 | 1/22/1306:1308, 1/22/1317:1318 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_5M1J_276 | 1/22/1339:1342, 1/22/1383:1385 | Isolated non-canonical cWW pair | homologous IL_8P9A_444 IL_87907.2 | |
| IL_5M1J_277 | 1/22/1345:1348, 1/22/1377:1380 | No text annotation | homologous IL_8P9A_445 IL_78800.1 | |
| IL_5M1J_206 | 1/22/1352:1354, 1/22/1369:1373 | Isolated non-canonical cWW pair | homologous IL_4V88_457 NA | |
| IL_5M1J_278 | 1/22/1480:1487, 1/22/1519:1527 | No text annotation | homologous IL_8CRE_462 IL_91698.1 | |
| IL_5M1J_207 | 1/22/1488:1494, 1/22/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_5M1J_208 | 1/22/1495:1498, 1/22/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_5M1J_209 | 1/22/1540:1545, 1/22/1566:1571 | No text annotation | geometric IL_8C3A_507 NA | |
| IL_5M1J_210 | 1/22/1636:1638, 1/22/1764:1767 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_5M1J_211 | 1/22/1638:1641, 1/22/1760:1764 | No text annotation | homologous IL_4V88_464 NA | |
| IL_5M1J_212 | 1/22/1642:1644, 1/22/1757:1759 | Isolated non-canonical cWW pair | geometric IL_5MWI_002 IL_87907.2 | |
| IL_5M1J_263 | 1/22/1642:1649, 1/22/1751:1759 | No text annotation | ||
| IL_5M1J_213 | 1/22/1644:1649, 1/22/1751:1757 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_5M1J_214 | 1/22/1650:1652, 1/22/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_5M1J_215 | 1/22/1653:1656, 1/22/1744:1747 | Double sheared | homologous IL_4V88_468 NA | |
| IL_5M1J_216 | 1/22/1656:1658, 1/22/1743:1744 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_5M1J_217 | 1/22/1665:1667, 1/22/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_5M1J_218 | 1/22/1669:1672, 1/22/1729:1732 | Double sheared | geometric IL_4V88_471 NA | |
| IL_5M1J_265 | 1/22/1669:1674, 1/22/1727:1732 | tSH-tHW-tHS-cWW | geometric IL_1L9A_008 IL_71294.3 | |
| IL_5M1J_219 | 1/22/1672:1674, 1/22/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_5M1J_220 | 1/22/1675:1678, 1/22/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_5M1J_221 | 1/22/1678:1682, 1/22/1719:1723 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_5M1J_222 | 1/34/15:16, 1/34/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_5M1J_223 | 1/34/21:27, 1/34/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_5M1J_224 | 1/34/28:29, 1/34/49:52 | Minor groove platform | homologous IL_5TBW_374 NA | |
| IL_5M1J_225 | 1/34/29:30, 1/34/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_5M1J_226 | 1/34/72:80, 1/34/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_5M1J_227 | 1/34/84:87, 1/34/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_5M1J_228 | 1/44/43:64, 1/44/96:101 | No text annotation | ||
| IL_5M1J_279 | 1/44/64:66, 1/44/93:96 | No text annotation | homologous IL_8CRE_150 IL_07785.1 | |
| IL_5M1J_230 | 1/44/68:69, 1/44/89:91 | Single bulged U | homologous IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5M1J_001 | No text annotation | ||
| IL_5M1J_011 | Major groove platform with extra pair | ||
| IL_5M1J_017 | Kink-turn related | ||
| IL_5M1J_232 | No text annotation | ||
| IL_5M1J_036 | Kink-turn related | ||
| IL_5M1J_234 | No text annotation | ||
| IL_5M1J_043 | Partly complementary | ||
| IL_5M1J_061 | No text annotation | ||
| IL_5M1J_063 | No text annotation | ||
| IL_5M1J_065 | Major groove platform with extra pair | ||
| IL_5M1J_237 | No text annotation | ||
| IL_5M1J_239 | No text annotation | ||
| IL_5M1J_084 | No text annotation | ||
| IL_5M1J_085 | Isolated non-canonical cWW pair | ||
| IL_5M1J_086 | Kink-turn related | ||
| IL_5M1J_088 | Single bulged G, near cWW | ||
| IL_5M1J_098 | No text annotation | ||
| IL_5M1J_244 | No text annotation | ||
| IL_5M1J_245 | Partly complementary | ||
| IL_5M1J_124 | UAA/GAN with extra cWW | ||
| IL_5M1J_125 | Tandem non-canonical cWW pairs | ||
| IL_5M1J_248 | No text annotation | ||
| IL_5M1J_151 | Tandem non-canonical cWW pairs | ||
| IL_5M1J_250 | No text annotation | ||
| IL_5M1J_251 | Tandem non-canonical cWW pairs | ||
| IL_5M1J_252 | Tandem non-canonical cWW pairs | ||
| IL_5M1J_166 | Triple sheared | ||
| IL_5M1J_255 | Isolated non-canonical cWW pair | ||
| IL_5M1J_256 | No text annotation | ||
| IL_5M1J_178 | Tandem non-canonical cWW pairs | ||
| IL_5M1J_258 | No text annotation | ||
| IL_5M1J_204 | Tandem non-canonical cWW pairs | ||
| IL_5M1J_205 | No text annotation | ||
| IL_5M1J_261 | No text annotation | ||
| IL_5M1J_262 | No text annotation | ||
| IL_5M1J_264 | Tandem non-canonical cWW pairs | ||
| IL_5M1J_266 | No text annotation | ||
| IL_5M1J_229 | No text annotation | ||
| IL_5M1J_267 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5M1J_001 | 1/14/113:123, 1/14/149:158, 1/14/263:267 | No text annotation | geometric J3_8C3A_001 NA | |
| J3_5M1J_050 | 1/14/113:124, 1/14/144:158, 1/14/263:267 | No text annotation | ||
| J3_5M1J_033 | 1/14/185:191, 1/14/204:214, 1/14/226:231 | No text annotation | ||
| J3_5M1J_034 | 1/14/340:356, 1/14/363:368, 1/44/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_5M1J_002 | 1/14/369:376, 1/14/403:404, 1/44/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_5M1J_035 | 1/14/369:379, 1/14/390:404, 1/44/19:20 | No text annotation | homologous J3_8P9A_047 J3_92134.2 | |
| J3_5M1J_003 | 1/14/502:503, 1/14/588:597, 1/14/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_5M1J_004 | 1/14/814:820, 1/14/905:907, 1/14/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_5M1J_005 | 1/14/828:831, 1/14/863:867, 1/14/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_5M1J_006 | 1/14/986:987, 1/14/1062:1066, 1/14/1092:1098 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_5M1J_007 | 1/14/1229:1232, 1/14/1256:1262, 1/14/1277:1280 | No text annotation | geometric J3_8VTW_042 NA | |
| J3_5M1J_051 | 1/14/1229:1232, 1/14/1256:1266, 1/14/1275:1280 | No text annotation | ||
| J3_5M1J_008 | 1/14/1479:1485, 1/14/1857:1859, 1/14/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_5M1J_009 | 1/14/1488:1491, 1/14/1837:1843, 1/14/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_5M1J_010 | 1/14/1526:1531, 1/14/1591:1595, 1/14/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_5M1J_038 | 1/14/1537:1542, 1/14/1551:1563, 1/14/1577:1584 | No text annotation | homologous J3_8P9A_056 J3_38098.1 | |
| J3_5M1J_052 | 1/14/1627:1632, 1/14/1641:1645, 1/14/1810:1816 | No text annotation | ||
| J3_5M1J_011 | 1/14/1631:1632, 1/14/1641:1645, 1/14/1810:1811 | No text annotation | geometric J3_5TBW_090 NA | |
| J3_5M1J_040 | 1/14/1654:1658, 1/14/1791:1792, 1/14/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_5M1J_053 | 1/14/1960:1963, 1/14/2059:2061, 1/14/2075:2081 | No text annotation | ||
| J3_5M1J_013 | 1/14/2432:2438, 1/14/2508:2517, 1/14/2590:2597 | No text annotation | ||
| J3_5M1J_054 | 1/14/2529:2532, 1/14/2547:2563, 1/14/2578:2581 | No text annotation | homologous J3_8P9A_060 J3_28639.1 | |
| J3_5M1J_042 | 1/14/2651:2653, 1/14/2754:2765, 1/14/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_5M1J_014 | 1/14/2664:2666, 1/14/2690:2692, 1/14/2701:2706 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_5M1J_043 | 1/14/2664:2668, 1/14/2686:2692, 1/14/2701:2706 | No text annotation | ||
| J3_5M1J_055 | 1/14/2886:2889, 1/14/2914:2916, 1/14/2930:2936 | No text annotation | homologous J3_8CRE_023 J3_62630.1 | |
| J3_5M1J_044 | 1/14/3168:3176, 1/14/3212:3220, 1/14/3265:3282 | No text annotation | ||
| J3_5M1J_016 | 1/14/3298:3300, 1/14/3314:3318, 1/14/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_5M1J_017 | 1/22/41:42, 1/22/433:439, 1/22/464:466 | No text annotation | homologous J3_8C3A_082 NA | |
| J3_5M1J_045 | 1/22/213:228, 1/22/237:243, 1/22/250:252 | No text annotation | ||
| J3_5M1J_018 | 1/22/633:635, 1/22/861:865, 1/22/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_5M1J_046 | 1/22/633:635, 1/22/861:866, 1/22/962:966 | No text annotation | homologous J3_8C3A_034 NA | |
| J3_5M1J_019 | 1/22/760:763, 1/22/773:775, 1/22/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_5M1J_020 | 1/22/881:884, 1/22/928:936, 1/22/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_5M1J_021 | 1/22/1037:1039, 1/22/1079:1083, 1/22/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_5M1J_022 | 1/22/1161:1164, 1/22/1581:1587, 1/22/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_5M1J_023 | 1/22/1168:1171, 1/22/1468:1470, 1/22/1574:1577 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_5M1J_047 | 1/22/1180:1187, 1/22/1198:1209, 1/22/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_5M1J_025 | 1/22/1215:1220, 1/22/1263:1267, 1/22/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_5M1J_026 | 1/22/1283:1288, 1/22/1327:1332, 1/22/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_5M1J_027 | 1/22/1293:1294, 1/22/1303:1306, 1/22/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_5M1J_048 | 1/22/1336:1338, 1/22/1386:1391, 1/22/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_5M1J_029 | 1/22/1470:1474, 1/22/1533:1540, 1/22/1571:1574 | No text annotation | homologous J3_8P9A_084 J3_37047.6 | |
| J3_5M1J_030 | 1/34/9:14, 1/34/66:67, 1/34/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_5M1J_056 | 1/44/44:45, 1/44/58:64, 1/44/96:100 | No text annotation | homologous J3_8CRE_027 J3_35667.2 | |
| J4_5M1J_001 | 1/14/112:113, 1/14/267:272, 1/14/293:299, 1/14/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_5M1J_002 | 1/14/185:191, 1/14/204:208, 1/14/212:214, 1/14/226:231 | No text annotation | ||
| J4_5M1J_003 | 1/14/1451:1457, 1/14/1475:1476, 1/14/1877:1880, 1/14/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
| J4_5M1J_004 | 1/14/1492:1496, 1/14/1520:1525, 1/14/1614:1615, 1/14/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_5M1J_005 | 1/14/1674:1675, 1/14/1693:1694, 1/14/1752:1753, 1/14/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_24280.2 | |
| J4_5M1J_006 | 1/14/2130:2134, 1/14/2146:2150, 1/14/2186:2190, 1/14/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_5M1J_007 | 1/14/2192:2194, 1/14/2248:2249, 1/14/2267:2276, 1/14/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_5M1J_013 | 1/14/2654:2658, 1/14/2712:2716, 1/14/2740:2742, 1/14/2751:2753 | No text annotation | homologous J4_8CRE_008 J4_04930.6 | |
| J4_5M1J_009 | 1/14/3010:3012, 1/14/3042:3043, 1/14/3098:3100, 1/14/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J4_5M1J_010 | 1/22/99:107, 1/22/307:309, 1/22/357:361, 1/22/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_5M1J_011 | 1/22/616:624, 1/22/975:980, 1/22/1021:1032, 1/22/1103:1105 | No text annotation | ||
| J4_5M1J_012 | 1/A3/7:10, 1/A3/25:27, 1/A3/43:49, 1/A3/65:66 | No text annotation | homologous J4_7K98_001 J4_70449.29 | |
| J5_5M1J_012 | 1/14/20:22, 1/44/35:42, 1/44/102:107, 1/44/115:116, 1/44/137:139 | No text annotation | homologous J5_8CRE_001 J5_01737.2 | |
| J5_5M1J_002 | 1/14/658:663, 1/14/799:802, 1/14/941:944, 1/14/1375:1376, 1/14/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_5M1J_003 | 1/14/675:678, 1/14/702:706, 1/14/713:721, 1/14/749:751, 1/14/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_5M1J_004 | 1/14/1906:1914, 1/14/1938:1939, 1/14/2109:2110, 1/14/2114:2122, 1/14/2331:2333 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_5M1J_005 | 1/14/2399:2406, 1/14/2815:2823, 1/14/2867:2876, 1/14/2951:2957, 1/14/2975:2980 | No text annotation | ||
| J5_5M1J_006 | 1/14/2416:2419, 1/14/2611:2614, 1/14/2627:2628, 1/14/2650:2651, 1/14/2798:2804 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_5M1J_007 | 1/22/31:35, 1/22/473:479, 1/22/509:516, 1/22/536:546, 1/22/592:595 | No text annotation | ||
| J5_5M1J_008 | 1/22/54:57, 1/22/90:97, 1/22/386:388, 1/22/409:413, 1/22/420:426 | No text annotation | ||
| J5_5M1J_009 | 1/22/124:149, 1/22/165:182, 1/22/203:204, 1/22/263:265, 1/22/289:293 | No text annotation | ||
| J5_5M1J_013 | 1/22/124:149, 1/22/165:182, 1/22/203:204, 1/22/263:267, 1/22/288:293 | No text annotation | ||
| J5_5M1J_014 | 1/22/636:641, 1/22/693:700, 1/22/739:744, 1/22/807:822, 1/22/850:860 | No text annotation | ||
| J6_5M1J_001 | 1/14/22:27, 1/14/58:68, 1/14/75:79, 1/14/106:110, 1/14/321:331, 1/44/32:35 | No text annotation | ||
| J6_5M1J_002 | 1/14/2416:2419, 1/14/2611:2614, 1/14/2627:2628, 1/14/2650:2653, 1/14/2754:2765, 1/14/2793:2804 | No text annotation | ||
| J7_5M1J_001 | 1/14/949:954, 1/14/967:968, 1/14/1114:1117, 1/14/1141:1146, 1/14/1157:1161, 1/14/1338:1339, 1/14/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5M1J_031 | No text annotation | ||
| J3_5M1J_032 | No text annotation | ||
| J3_5M1J_036 | No text annotation | ||
| J3_5M1J_037 | No text annotation | ||
| J3_5M1J_039 | No text annotation | ||
| J3_5M1J_012 | No text annotation | ||
| J3_5M1J_041 | No text annotation | ||
| J3_5M1J_015 | No text annotation | ||
| J3_5M1J_024 | No text annotation | ||
| J3_5M1J_028 | No text annotation | ||
| J3_5M1J_049 | No text annotation | ||
| J4_5M1J_008 | No text annotation | ||
| J5_5M1J_001 | No text annotation | ||
| J5_5M1J_010 | No text annotation | ||
| J5_5M1J_011 | No text annotation |
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