HL_5M1J_023

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

5M1J|1|14|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_023 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.1612

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5M1J|1|14|C|1023
5M1J|1|14|G|1024
5M1J|1|14|A|1025
5M1J|1|14|A|1026
5M1J|1|14|A|1027
5M1J|1|14|U|1028
5M1J|1|14|G|1029

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain J5

60S ribosomal protein L11-A

Chain P2

40S ribosomal protein S15

Chain S2

40S ribosomal protein S18-A