HL_5M1J_030

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_030 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.1045

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5M1J|1|14|C|1403
5M1J|1|14|G|1404
5M1J|1|14|U|1405
5M1J|1|14|A|1406
5M1J|1|14|A|1407
5M1J|1|14|G|1408

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain e5

60S ribosomal protein L32