HL_5M1J_031

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_031 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1358

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5M1J|1|14|A|1462
5M1J|1|14|U|1463
5M1J|1|14|G|1464
5M1J|1|14|A|1465
5M1J|1|14|G|1466
5M1J|1|14|A|1467
5M1J|1|14|A|1468
5M1J|1|14|C|1469
5M1J|1|14|U|1470

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain P5

60S ribosomal protein L17-A

Chain R5

60S ribosomal protein L19-A

Chain d5

60S ribosomal protein L31-A