HL_5M1J_033

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_033 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.0879

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5M1J|1|14|G|1544
5M1J|1|14|A|1545
5M1J|1|14|A|1546
5M1J|1|14|G|1547
5M1J|1|14|C|1548
5M1J|1|14|U|1549

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain N5

60S ribosomal protein L15-A

Chain j5

60S ribosomal protein L37-A