3D structure

PDB id
5M1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nonstop ribosomal complex bound with Dom34 and Hbs1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5M1J_052 not in the Motif Atlas
Geometric match to HL_7RQB_016
Geometric discrepancy: 0.2559
The information below is about HL_7RQB_016
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

5M1J|1|14|C|2470
5M1J|1|14|U|2471
5M1J|1|14|U|2472
5M1J|1|14|C|2473
5M1J|1|14|G|2474
5M1J|1|14|G|2475

Current chains

Chain 14
25S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2136 s