HL_5M1J_053

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

5M1J|1|14|U|2538, 5M1J|1|14|C|2539, 5M1J|1|14|A|2540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_053 not in the Motif Atlas

Geometric match to HL_7UQ6_001

Geometric discrepancy: 0.3045

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

5M1J|1|14|G|2534
5M1J|1|14|A|2535
5M1J|1|14|A|2536
5M1J|1|14|U|2537
5M1J|1|14|U|2538
5M1J|1|14|C|2539
5M1J|1|14|A|2540
5M1J|1|14|U|2541
5M1J|1|14|U|2542
5M1J|1|14|U|2543
5M1J|1|14|U|2544
5M1J|1|14|C|2545

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B2

40S ribosomal protein S1-A

Chain G5

60S ribosomal protein L8-A

Chain g5

60S ribosomal protein L34-A