HL_5M1J_054

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

5M1J|1|14|A|2569, 5M1J|1|14|U|2570

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_054 not in the Motif Atlas

Homologous match to HL_5TBW_053

Geometric discrepancy: 0.5691

The information below is about HL_5TBW_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24079.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5M1J|1|14|C|2568
5M1J|1|14|A|2569
5M1J|1|14|U|2570
5M1J|1|14|U|2571
5M1J|1|14|C|2572
5M1J|1|14|G|2573

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain Z5

60S ribosomal protein L27-A