HL_5M1J_058

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_058 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1181

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

5M1J|1|14|C|2693
5M1J|1|14|A|2694
5M1J|1|14|A|2695
5M1J|1|14|A|2696
5M1J|1|14|A|2697
5M1J|1|14|G|2698
5M1J|1|14|G|2699
5M1J|1|14|G|2700

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain I5

60S ribosomal protein L10

Chain T5

60S ribosomal protein L21-A