HL_5M1J_060

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_060 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.136

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5M1J|1|14|U|2744
5M1J|1|14|G|2745
5M1J|1|14|A|2746
5M1J|1|14|A|2747
5M1J|1|14|A|2748
5M1J|1|14|G|2749

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain D5

60S ribosomal protein L5

Chain T5

60S ribosomal protein L21-A

Chain o5

60S ribosomal protein L42-B