HL_5M1J_066
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5M1J_066 not in the Motif Atlas
- Geometric match to HL_5B2T_003
- Geometric discrepancy: 0.0965
- The information below is about HL_5B2T_003
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
5M1J|1|14|C|3025
5M1J|1|14|G|3026
5M1J|1|14|A|3027
5M1J|1|14|G|3028
5M1J|1|14|A|3029
5M1J|1|14|G|3030
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain A1
- Protein DOM34
- Chain A6
- Protein HBS1
- Chain H5
- 60S ribosomal protein L9-A
- Chain m5
- Ubiquitin-60S ribosomal protein L40
Coloring options: