HL_5M1J_068

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5M1J|1|14|G|3116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1076

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5M1J|1|14|C|3110
5M1J|1|14|U|3111
5M1J|1|14|G|3112
5M1J|1|14|A|3113
5M1J|1|14|A|3114
5M1J|1|14|C|3115
5M1J|1|14|G|3116
5M1J|1|14|C|3117
5M1J|1|14|C|3118
5M1J|1|14|U|3119
5M1J|1|14|C|3120
5M1J|1|14|U|3121
5M1J|1|14|A|3122
5M1J|1|14|A|3123
5M1J|1|14|G|3124

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain H5

60S ribosomal protein L9-A

Chain K5

60S ribosomal protein L16-A

Chain m5

Ubiquitin-60S ribosomal protein L40