HL_5M1J_071

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

5M1J|1|14|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_071 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1563

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5M1J|1|14|G|3303
5M1J|1|14|U|3304
5M1J|1|14|A|3305
5M1J|1|14|U|3306
5M1J|1|14|A|3307
5M1J|1|14|C|3308
5M1J|1|14|G|3309
5M1J|1|14|A|3310
5M1J|1|14|C|3311

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain P5

60S ribosomal protein L17-A