HL_5M1J_076

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

5M1J|1|22|U|193, 5M1J|1|22|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_076 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3367

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5M1J|1|22|C|190
5M1J|1|22|C|191
5M1J|1|22|U|192
5M1J|1|22|U|193
5M1J|1|22|U|194
5M1J|1|22|G|195

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain I2

40S ribosomal protein S8-A