HL_5M1J_077

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5M1J|1|22|U|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5M1J_077 not in the Motif Atlas

Geometric match to HL_5J7L_171

Geometric discrepancy: 0.3007

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5M1J|1|22|C|230
5M1J|1|22|U|231
5M1J|1|22|U|232
5M1J|1|22|C|233
5M1J|1|22|G|234
5M1J|1|22|G|235

Current chains

Chain 22

18S ribosomal RNA

Nearby chains